BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934303
Length=1157
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36710.1 | Symbols: | Pectin lyase-like superfamily protein... 472 5e-132
> AT2G36710.1 | Symbols: | Pectin lyase-like superfamily protein
| chr2:15389466-15391251 REVERSE LENGTH=1423
Length=1423
Score = 472 bits (255), Expect = 5e-132
Identities = 686/889 (77%), Gaps = 50/889 (6%)
Strand=Plus/Plus
Query 174 TTCTCTTGTGATCACTGTTGATCCGAATGGACATGGTAACTTCACCAAAGTTCAAAACGC 233
|||||||||| | ||||||||| | |||| ||||||||||| ||| ||||||| |||
Sbjct 312 TTCTCTTGTGTTGACTGTTGATTTGCATGGTTGTGGTAACTTCAGCAATGTTCAAAGCGC 371
Query 234 CATTGATGCTGTACCTGATTTAAGCTCTTCCAAGACTCTCATCATCATCAATTCAGGAGT 293
|||||||| ||| ||||||||||||||||||||||||||||||||| | ||||| || ||
Sbjct 372 CATTGATGTTGTCCCTGATTTAAGCTCTTCCAAGACTCTCATCATCGTTAATTC-GG-GT 429
Query 294 T-T-ACAGGGAAAAGGTTATGGTTAGTGTAAACAAGACAAACATTATGATGAAAGGCAGA 351
| | | ||||||||||||| ||||| || ||||||||||||| || | || |||| |||
Sbjct 430 TCTTATAGGGAAAAGGTTACGGTTAATGAAAACAAGACAAACCTTGTTATTCAAGGAAGA 489
Query 352 GGATATCAAAGA-ACGATT-ATTGAGTGGAATGATACTTCTCGTTCATCAGGAAGA-ACT 408
|||||||||| | || || || || ||||| || || | || | |||| | |||
Sbjct 490 GGATATCAAA-ACAC-ATCCATCGAATGGAACGACACAGCAAAATCCGCCGGAA-ACACT 546
Query 409 -CAAGATAGCTACTCTTTTGGTA-TATTTGCAGCAAATTTCGTTGCTTATAATATCAGCT 466
| ||||||| ||| |||| || | |||||||| || ||| ||||| || || || |
Sbjct 547 GCT-GATAGCTTCTCCTTTG-TAGTGTTTGCAGCTAACTTCACAGCTTACAACATTAGTT 604
Query 467 TCAAGAACTATGCTCCAGAACCTGAACCCGGTGTTGAAGGTGCACAAGCTGTAGC-CATT 525
|||||||| |||| |||||||| || || |||| | | ||||||||| ||||| | |
Sbjct 605 TCAAGAACAATGCACCAGAACCAGATCCTGGTGAAGCTGATGCACAAGCAGTAGCTC-TA 663
Query 526 AGAATTGATGGAGATCAAGCAGCATTCTATGGGTGTGGATTCTACAGTGCTCAAGACAC- 584
|| ||||| ||||| ||||| || || ||||| ||||||||||| | |||||||| ||
Sbjct 664 AGGATTGAAGGAGACCAAGCTGCCTTTTATGGTTGTGGATTCTATGGGGCTCAAGATACA 723
Query 585 CGTCTTG--GATAGCAATGGAAGGCATTACTTCAA-GCAATGCGTCATCCAAGGCTCCAT 641
| ||| | |||| || ||||| |||| |||||| | | ||| |||| ||||| |||||
Sbjct 724 CTTCTAGATGATA--AA-GGAAGACATTTCTTCAAAG-AGTGCTTCATTCAAGGGTCCAT 779
Query 642 TGACTTCATATATGGCAAAGGAAGATCGCTGTATGATGAATG--CTTAAT-AAGGTCTAT 698
|| || |||| |||||| |||||||| || || | || || || | | || || ||
Sbjct 780 AGATTTTATATTTGGCAATGGAAGATCACTCTACCAGGATTGTACT-A-TCAAT-TCAAT 836
Query 699 AGCCAAAGAG-AGTACCTCAGG-GATTAGTGGAATC-ATTACAGCTCAGGGAAGGGAATC 755
||| |||| | | ||| || || | ||| ||| || || |||||||| ||||| ||||
Sbjct 837 AGC-AAAGGGGAATACATCCGGAG-TTACCGGA-TCTATCACAGCTCAAGGAAGACAATC 893
Query 756 A-ATTGATGAGA-AGTCTGGATTTTCTTTCT-TAAAGTGTAAGATAGAGGGAACCGGG-A 811
| | ||||| | |||| ||||| ||||| | | || |||||||| || || | ||| |
Sbjct 894 AGAA-GATGA-ACAGTCAGGATTCTCTTT-TGTGAATTGTAAGATCGATGGCAGTGGGGA 950
Query 812 AGGTGTGGCTTGGGCGACCCTGGAGAGCCTATGCAACTGTGGTTTTCTCTCAA-ACTTAC 870
| | | |||||| || | ||| |||||||||| || || || ||||| || ||||||
Sbjct 951 AA-TATTGCTTGGAAGAGCTTGGGGAGCCTATGCTACAGTCGTGTTCTCA-AATACTTAC 1008
Query 871 ATGTCTCGAATCATCT-CTCCCGAGGGATGGAATGACTGGGGAAA-TCTGACCCGAGACA 928
|||||| ||||||| | |||| || ||||||||| |||||||| | || |||| ||| |
Sbjct 1009 ATGTCTGGAATCAT-TACTCCAGAAGGATGGAATAACTGGGGAGACTC-GACCAAAGAAA 1066
Query 929 AGACTGTGACTTTTGGAGAGCATAGATGCTATGGAGAAGGATCTGATTACAAAGGGAGGG 988
|||| ||||||||||||||||||| |||||||||| ||| | |||||||||| |||||
Sbjct 1067 AGACGGTGACTTTTGGAGAGCATAAATGCTATGGACCGGGAGCAGATTACAAAGAGAGGG 1126
Query 989 TTCCATATGCGAAACAACTAACAGATTCAGAAGCATCTTCATTCACAGA 1037
|| | || ||||||||| |||||||||||||||||||| |||| |||
Sbjct 1127 TTTTGTTTGGGAAACAACTCACAGATTCAGAAGCATCTTCTTTCATAGA 1175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56776816395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5