BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934307
Length=326
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36695.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 132 2e-30
> AT2G36695.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria - 22429;
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0;
Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:15382661-15383440
FORWARD LENGTH=537
Length=537
Score = 132 bits (71), Expect = 2e-30
Identities = 214/281 (76%), Gaps = 18/281 (6%)
Strand=Plus/Plus
Query 20 GATGG-TGTGCAAGAGTTTGGTTATGGTTCTCATATTTGTCTCTCTCTTTGGTCTTCACC 78
||||| | || |||| ||||||| |||||||| ||||||||||||||||||||||||
Sbjct 47 GATGGCT-TGTAAGAATTTGGTTGCCATTCTCATAATTGTCTCTCTCTTTGGTCTTCACC 105
Query 79 AATGTGAAGAT-ATTGATCATCCGAAGGGAATAGAAAGATGTGTT-CGGAGATATATGGG 136
||||||| ||| || | ||||| |||||||||||||||||| || | ||| | | ||
Sbjct 106 AATGTGATGATGATCCA-CATCCCAAGGGAATAGAAAGATGTTTTACAC-GATTTGTTGG 163
Query 137 AAAGCCAT-TGACAATACAGTATTTGTGTTGTATAGAAGCTCC-TCGGATTTGCTTCACA 194
|||||||| | || | || ||||||||||| | |||||||| | ||||||||||| |
Sbjct 164 AAAGCCATATT-CATTGGAGGATTTGTGTTGTGTCGAAGCTCCCT-GGATTTGCTTCGCT 221
Query 195 CCCCTCAC-TC-CAGAAC-AATGCCTCACGAAGTGTCCGCCACTGCGAAAAGGAGCACCG 251
| | || | | || | ||||| ||| || ||| ||||| |||| |||||| |||
Sbjct 222 GGC-T-ACCTTACGGA-CGAATGCATCAAGAGGTGCCCGCCTTTGCGTGAAGGAGTACCA 278
Query 252 CCCTCTTCGTCGCCGGGGAAACG-AGTAGCGCCGTCCCCAC 291
|| ||| | | | || |||| | |||||| ||||| ||||
Sbjct 279 CCGTCTCCACCAC-GGCGAAAAGGAGTAGCACCGTCTCCAC 318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15180860198
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5