BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934309
Length=1565
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36730.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2342 0.0
> AT2G36730.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr2:15405068-15406573 REVERSE LENGTH=1506
Length=1506
Score = 2342 bits (1268), Expect = 0.0
Identities = 1422/1499 (95%), Gaps = 0/1499 (0%)
Strand=Plus/Plus
Query 21 ATGATTCGCAGTTTAGATTCAAGCTTCAAATCCAAGAAACACCAATGTCTTATCTTCCTC 80
|||||| | |||| ||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGATTTGGAGTTCAGATTCATGCTTCAAATCCAGGAAACACCAATGTCTTATCTTCCTC 60
Query 81 AAGCTCTGTTCCTCCATTAAACATCTTTTACAGATCCATGGTCAAATCCATGTCTCCTCT 140
||||| |||||||| |||||||| ||| ||||||||||||||||||||||| ||||||||
Sbjct 61 AAGCTATGTTCCTCAATTAAACACCTTCTACAGATCCATGGTCAAATCCATCTCTCCTCT 120
Query 141 CTCCAACATGATAGCTTTATCATCAGCGAGCTTATACGGGTTTCTTCACTATCTCACACC 200
|||||| |||| ||||||||||||||||||||| |||||||||| |||||||| | | ||
Sbjct 121 CTCCAAAATGACAGCTTTATCATCAGCGAGCTTGTACGGGTTTCATCACTATCCCTCGCC 180
Query 201 AAAGACCTTGCCTTTGCACGAACCCTCCTGCTTCACTCTTCAGATTCGACTCCTTCTACT 260
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 AAAGACCTTGCCTTTGCGCGAACCCTTCTGCTTCACTCTTCAGATTCGACTCCTTCTACT 240
Query 261 TGGAATATGCTCACCAGAGGCTATTCTTCGAGTGATACTCCTGTAGAATCGATTTGGGTT 320
||||||||||||| |||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct 241 TGGAATATGCTCAGTAGAGGCTATTCTTCAAGTGATTCTCCTGTGGAATCGATTTGGGTT 300
Query 321 TACTCTGAGATGAAGAGACGACGAATCAAACCTAATAAGCTCACTTTTCCTTTTCTTCTT 380
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 TACTCTGAGATGAAGAGACGAGGAATCAAACCTAATAAGCTCACTTTTCCTTTTCTTCTC 360
Query 381 AAAGCTTGTGCTTCGTTTTTAGGTCTCACGGCTGGGAGACAGATTCAAGTTGAGGTTTTG 440
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 AAGGCTTGTGCTTCGTTTTTAGGTCTCACTGCTGGGAGACAGATTCAAGTTGAGGTTTTG 420
Query 441 AAGCATGGGTTTGATTCTGATGTGTATGTTGGGAACAATTTGATTCATCTCTATGGTTCT 500
|| ||||||||||||| |||||| |||||||||||||||||||| ||||| |||||| ||
Sbjct 421 AAACATGGGTTTGATTTTGATGTATATGTTGGGAACAATTTGATCCATCTTTATGGTACT 480
Query 501 TGTAAGAAAACTTCTGATGCCAGGAAGGTGTTCGACGAAATGACTGAGAGAAATGTTGTT 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGTAAGAAAACTTCTGATGCCAGGAAGGTGTTCGACGAAATGACTGAGAGAAATGTTGTT 540
Query 561 TCTTGGAACTCGATTATGACAGCTCTCGTTGAGAATGGTAAGTTCAATTTGGTGGTTGAG 620
|||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| |||||
Sbjct 541 TCTTGGAACTCGATTATGACTGCTCTTGTTGAGAATGGTAAGTTAAATTTGGTGTTTGAG 600
Query 621 TGtttttttGAGATGATTGGTAGGCGGTTTTGTCCGGATGAGACGACAATGGTGGTTTTG 680
||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 601 TGTTTTTGTGAGATGATTGGTAAGCGGTTTTGTCCAGATGAGACGACAATGGTGGTTTTG 660
Query 681 CTTTCGGCATGTGGTGGTAACTTGAGCTTGGGGAAATTGGTGCATTCACAGGTGATGGTA 740
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTTTCGGCTTGTGGCGGTAACTTGAGCTTGGGGAAATTGGTGCATTCACAGGTGATGGTA 720
Query 741 AGAGAGTTAGAGTTGAACTGTAGACTAGGTACTGCACTTGTTGACATGTATGCAAAATCT 800
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 721 AGAGAGTTAGAGTTAAACTGTAGACTAGGTACTGCACTTGTAGACATGTATGCAAAATCA 780
Query 801 GGTGGATTAAAGTATGCTCGGTTAGTTTTCGAAAGAATGGCTGACAAAAATGTTTGGACT 860
||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 781 GGTGGATTAGAGTATGCTAGGTTAGTTTTCGAAAGAATGGTTGACAAAAATGTTTGGACT 840
Query 861 TGGAGCGCCATGATTGTAGGATTAGCACAATATGGGTTTGCAGAAGAAGCCCTTCAACTA 920
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 841 TGGAGTGCCATGATTGTAGGATTAGCACAATATGGATTTGCAGAAGAAGCCCTTCAACTA 900
Query 921 TTCTCGAAGATGATGAAAGAATCATCAGTTAGACCAAACTACGTGACATTTCTTGGTGTT 980
|||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||
Sbjct 901 TTCTCGAAGATGATGAAAGAATCATCGGTGAGACCAAACTACGTAACATTTCTCGGTGTT 960
Query 981 TTATGCGCTTGTAGCCACACGGGATTGGTGGATGACGGGTACAAATACTTCCACGAAATG 1040
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 961 TTATGCGCTTGTAGCCACACGGGATTGGTGGATGACGGGTACAAATATTTCCACGAAATG 1020
Query 1041 GAGAAAACACACAAGATCAAACCAATGATGATTCACTACGGGGCAATGATCGATATCTTG 1100
||||||| ||||||||||||||||||||||||||||||||| |||||| | |||||||||
Sbjct 1021 GAGAAAATACACAAGATCAAACCAATGATGATTCACTACGGAGCAATGGTAGATATCTTG 1080
Query 1101 GGACGTGCAGGTCGACTAAACGAGGCATATGACTTCATACAGAAAATGCCTTTTGAGCCT 1160
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1081 GGACGTGCAGGTCGACTAAACGAGGCGTATGACTTCATAAAGAAAATGCCTTTTGAGCCT 1140
Query 1161 GATGCGGTTGTTTGGAGAACTCTACTCTCTGCTTGTAGTATCCATCACGATGAAGATGAT 1220
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1141 GATGCGGTTGTTTGGAGGACTCTACTCTCCGCTTGTAGTATCCATCACGATGAAGATGAT 1200
Query 1221 AAGGGAATTGGAGAGAAAGTAAAGAAGAGATTGATTGAGTTAGAGCCAAAGAGGAGTGGT 1280
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1201 GAGGGAATTGGTGAGAAAGTAAAGAAGAGATTGATTGAGTTAGAACCAAAGAGGAGTGGG 1260
Query 1281 AATTTGGTGATTGTGGCGAATAGGTTTGCGGAAGCGAGGATGTGGGATGAGGCAGCAGAA 1340
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1261 AATTTGGTGATTGTGGCGAATAGGTTTGCGGAAGCGAGGATGTGGGCTGAGGCAGCAGAA 1320
Query 1341 GTTAGGAGAGTAATGAAGGAAACTAAGATGAAGAAGATAGCTGGAGAGAGTTGTCTAGAG 1400
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1321 GTTAGGAGAGTAATGAAGGAAACTAAGATGAAGAAGATCGCCGGAGAGAGTTGTCTAGAG 1380
Query 1401 CTAGGAGGGTCGTTTCATAGATTCTTCTCAGGGTATGATCCTCGTTCTGAGTATGTATCC 1460
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1381 CTAGGAGGGTCGTTTCATAGATTCTTCTCAGGGTATGATCCTCGTTCTGAATATGTATCC 1440
Query 1461 ATCTATGTGTTATTAGATTTGTTCAAGTTTCAATTGACATGTGACAATCATTTGGTGTC 1519
||||||| ||||||||||||||||||||||| |||||||||||| ||| |||||||||
Sbjct 1441 ATCTATGAATTATTAGATTTGTTCAAGTTTCAGTTGACATGTGACTATCGTTTGGTGTC 1499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77258638755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5