BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934316
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03910.2 | Symbols: | EXPRESSED IN: 24 plant structures; EX... 573 2e-162
AT2G36815.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 361 2e-98
> AT1G03910.2 | Symbols: | EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134),
Cactin, central region (InterPro:IPR018816);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G36815.2). | chr1:996115-1000437 FORWARD LENGTH=2466
Length=2466
Score = 573 bits (310), Expect = 2e-162
Identities = 445/510 (87%), Gaps = 9/510 (2%)
Strand=Plus/Plus
Query 1183 AGAAGATAACTTGGAGCTTAAGGCAATGAAAACAATGAGAGAAATGGAGGAAGGTTATGT 1242
||||||||||||||||||||| ||||||||| ||||| ||| |||||| |||||| |||
Sbjct 1774 AGAAGATAACTTGGAGCTTAAAGCAATGAAAGCAATGGGAGCAATGGAAGAAGGTGATGC 1833
Query 1243 TGTATTTGGCTCTAATGCTGAAGTGAACCTTGATCCCAAGGTATGCAAGTGGCATGACAA 1302
|||||||||||||||||||||||||||| ||| || |||||| | ||||||||||||
Sbjct 1834 CATATTTGGCTCTAATGCTGAAGTGAACCTCGATTCCGAGGTATACTGGTGGCATGACAA 1893
Query 1303 GTACCGGCCTAA-AAAACCCAAGTATTTCAACCGAGTTCACACGGGTTACGAGTGGAATA 1361
||||||||| || |||||| ||||||||||| || |||||||| |||||||| |||||||
Sbjct 1894 GTACCGGCC-AAGAAAACCGAAGTATTTCAATCGGGTTCACACAGGTTACGAATGGAATA 1952
Query 1362 AGTATAACCAAACACATTATGATCACCATAACCCGCCTCCAAAATTTGTTCAAGGGTACA 1421
||||||||||||| || ||||| ||| |||| |||||||||||| | |||||||| ||||
Sbjct 1953 AGTATAACCAAACTCACTATGACCACGATAATCCGCCTCCAAAAATCGTTCAAGGATACA 2012
Query 1422 AGTTTAACATCTTCTACCCGGATTTAGTAGACGACACTGAAGT-TCCCACTTGCACTATA 1480
|||||||||||||||||||||||||||||||| | | | ||| ||||| || ||||||
Sbjct 2013 AGTTTAACATCTTCTACCCGGATTTAGTAGACAAAATT-AAGGCTCCCATTTACACTATC 2071
Query 1481 GAAAAAGATGGGACAAGCT-CTGAAACTTGTATAATCCGGTTTGAAGCTGGTCCGCCTTA 1539
||||||||||||||||| | ||||||| ||||| |||||||| | |||||||| |||||
Sbjct 2072 GAAAAAGATGGGACAAG-TGCTGAAACGTGTATGATCCGGTTCCATGCTGGTCCACCTTA 2130
Query 1540 TGAAGACATTGCGTTCCGGATTGTGAATAAGGAATGGGAGAAATCTCGTAAGAAAGGTTA 1599
|||||||||||||||||||||||||||||| ||||||||| | |||| ||||||||||
Sbjct 2131 TGAAGACATTGCGTTCCGGATTGTGAATAAAGAATGGGAGTATTCTCACAAGAAAGGTTT 2190
Query 1600 CAAATACACGTTCGAGCATGGGATTCTACATTTGTAC---AACTTTAAACGACTTCGGTA 1656
||||| |||||| |||| ||||||||| ||||||||| ||||||||||||| | ||||
Sbjct 2191 CAAATGCACGTTTGAGCGTGGGATTCTGCATTTGTACTTCAACTTTAAACGACATAGGTA 2250
Query 1657 CAGGCGATAAACTGGTCGGAGTTTGGCTGG 1686
|||||||||| || |||||||||||||||
Sbjct 2251 CAGGCGATAACCTTATCGGAGTTTGGCTGG 2280
Score = 302 bits (163), Expect = 9e-81
Identities = 201/219 (92%), Gaps = 3/219 (1%)
Strand=Plus/Plus
Query 768 TTGC-TGCTCAAGAAAGGGGACTACACGCTGGTGTTGAAGCTGATGTGAGAGAACTTCTT 826
|||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1205 TTGCTTGCTCAAGAGAGGGGACTACACGCTGGTGTTGAAGCTGATGTGAGAAAACTTCTC 1264
Query 827 GATGGGAAGACCCACGCGGAGCTTGTACAACTGCAGTTTGACATCGAGTCGCAGCTGCGA 886
||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||
Sbjct 1265 GATGGGAAGACCCACGCGGAGCTTGTAGAACTGCAGTTGGACATCGAATCGCAGCTGCGT 1324
Query 887 TCTGGAG-CAGCCAAAGTAGTGGAGTATTGGGAAGCGGTTCTTAAACGCATCCATATATA 945
||||| | | || |||||||| |||||||||||||| |||||||||||| || | |||||
Sbjct 1325 TCTGG-GTCTGCGAAAGTAGTAGAGTATTGGGAAGCAGTTCTTAAACGCCTCGAAATATA 1383
Query 946 CAAGGCAAAGGCTTGCTTGAAGGAAATAAACGCTGAGAT 984
|||||||||||||||||||||||||||| ||||||||||
Sbjct 1384 CAAGGCAAAGGCTTGCTTGAAGGAAATACACGCTGAGAT 1422
> AT2G36815.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cactin,
central region (InterPro:IPR018816); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G03910.2);
Has 53 Blast hits to 53 proteins in 24 species: Archae - 0;
Bacteria - 0; Metazoa - 6; Fungi - 12; Plants - 32; Viruses
- 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr2:15440769-15441276
FORWARD LENGTH=324
Length=324
Score = 361 bits (195), Expect = 2e-98
Identities = 230/247 (93%), Gaps = 1/247 (0%)
Strand=Plus/Plus
Query 728 TGGGAGTTAGCTAAAGCTCGTAGAAGAGATGAGGAATTGCTTGCTGCTCAAGAAAGGGGA 787
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 79 TGGGAGTTAACTAAAGCTCGTAGAAGAGATGAGGAATTGCTTGCTTCTCAAGAAAGAGCA 138
Query 788 CTACACGCTGGTGTTGAAGCTGATGTGAGAGAACTTCTTGATGGGAAGACCCACGCGGAG 847
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 139 CTACACGCTGGTGTTGAAGCTGGTGTGAGAGAACTTCTTGATGGGAAGACTCACGCGGAG 198
Query 848 CTTGTACAACTGCAGTTTGACATCGAGTCGCAGCTGCGATCTGGAGCAGCCAAAGTAGTG 907
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 199 CTTGTACAACTGCAGTTTGACATCGAATCGCAGCTGCGCTCTGGAGCAGCCAAAGTGGTA 258
Query 908 GAGTATTGGGAAGCGGTTCTTAAACGCATCCATATATACAAGGCAAAGGCTTGCTTGAAG 967
|||||| |||||||||||||||||||| || ||| ||| || ||||||||||||||||||
Sbjct 259 GAGTATAGGGAAGCGGTTCTTAAACGCCTCAATAGATATAAAGCAAAGGCTTGCTTGAAG 318
Query 968 GAAATAA 974
||||||
Sbjct 319 -AAATAA 324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83332904700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5