BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934328
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04430.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 139 1e-32
> AT1G04430.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr1:1198118-1201527
FORWARD LENGTH=2379
Length=2379
Score = 139 bits (75), Expect = 1e-32
Identities = 157/193 (81%), Gaps = 19/193 (10%)
Strand=Plus/Plus
Query 31 ATAAGACCAAAGG-AGCTGGGTTAGCTCCTTTGCCAGCTAGGTTGACTTCGTCTCCTCCC 89
|||| ||||| || || |||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1486 ATAAAACCAAGGGAAG-TGGGTTAGCTCCTTGGCCAGCTAGGTTGACTTCTTCTCCTCCC 1544
Query 90 CGTCTTGCGGATTTCCGTTATTCAACGGGTATATTTGAGAA-G-TA---TAC----G--A 138
||||||||||||||| |||||||||| | || |||||||| | | || | |
Sbjct 1545 CGTCTTGCGGATTTCGGTTATTCAACCGACATGTTTGAGAAGGACACGGAACTTTGGAAA 1604
Query 139 CAACAAGTGGAC----A--GGAGTGTAATGTCGTCAAAAGTCAAATCAAACACTGTGAGG 192
|||||||||||| | ||| | | ||||| || ||||||||||||||||||||||||
Sbjct 1605 CAACAAGTGGACAGTTACTGGAATCTGATGTCATCGAAAGTCAAATCAAACACTGTGAGG 1664
Query 193 AACATAATAGACA 205
|||||||| ||||
Sbjct 1665 AACATAATGGACA 1677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14828985955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5