BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934354
Length=568
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37060.1 | Symbols: NF-YB8 | nuclear factor Y, subunit B8 | ... 850 0.0
AT3G53340.1 | Symbols: NF-YB10 | nuclear factor Y, subunit B10 ... 529 1e-149
> AT2G37060.1 | Symbols: NF-YB8 | nuclear factor Y, subunit B8
| chr2:15576063-15577877 FORWARD LENGTH=841
Length=841
Score = 850 bits (460), Expect = 0.0
Identities = 523/552 (95%), Gaps = 10/552 (2%)
Strand=Plus/Plus
Query 20 GATGGCGGAGTCACAGGCCAAGAGTCCCGGAGGCTGTGGAAGCCATGAGAGTGGTGGAGA 79
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 102 GATGGCGGAGTCGCAGGCCAAGAGTCCCGGAGGCTGTGGAAGCCATGAGAGTGGTGGAGA 161
Query 80 TCAAAGTCCGAGGTCGTTACATGTTCGTGAGCAAGATAGGTTTCTTCCGATTGCTAACAT 139
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 TCAAAGTCCCAGGTCGTTACATGTTCGTGAGCAAGATAGGTTTCTTCCGATTGCTAACAT 221
Query 140 AAGCCGTATCATGAAAAGAGGTCTTCCTGCTAATGGCAAAATTGCTAAAGATGCTAAGGA 199
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 222 AAGCCGTATCATGAAAAGAGGTCTTCCTGCTAATGGGAAAATCGCTAAAGATGCTAAGGA 281
Query 200 GATTGTGCAGGAATGTGTTTCTGAATTCATCAGCTTCATTACCAGCGAAGCGAGTGATAA 259
|||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||||
Sbjct 282 GATTGTGCAGGAATGTGTCTCTGAATTCATCAGTTTCGTCACCAGCGAAGCGAGTGATAA 341
Query 260 ATGTCAAAGAGAGAAAAGGAAGACCATCAATGGAGATGATTTGCTTTGGGCAATGGCCAC 319
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 342 ATGTCAAAGAGAGAAAAGGAAGACTATTAATGGAGATGATTTGCTTTGGGCAATGGCTAC 401
Query 320 TTTAGGATTTGAAGACTACATGGAACCCCTGAAGGTTTACCTGATGAGATATAGAGAGAT 379
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 402 TTTAGGATTTGAAGACTACATGGAACCTCTCAAGGTTTACCTGATGAGATATAGAGAGAT 461
Query 380 GGAGGGTGACACAAAGGGATCAGCAAAAGGTGGGGATGCAAATGCAAAGAAAGATGGGAA 439
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 462 GGAGGGTGACACAAAGGGATCAGCAAAAGGTGGGGATCCAAATGCAAAGAAAGATGGGCA 521
Query 440 ATCAAGCCAAAATGGCCAGTTCGCTCACCAAGGCTCTTTTTCAC-AAGGTCCTTATGGGA 498
|||||||||||||||||||||| || | | | || | | ||| |||||||||||||||
Sbjct 522 ATCAAGCCAAAATGGCCAGTTC--TCGC-A-G-CT-TGCT-CACCAAGGTCCTTATGGGA 574
Query 499 ACTCTCAAGCTCAGCAGCATATGATGGTTCCAATGCCGGGAACAGACTAGTAT-A-AGGA 556
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 575 ACTCTCAAGCTCAGCAGCATATGATGGTTCCAATGCCGGGAACAGACTAGTATGAGAGGA 634
Query 557 TTATTCAACTTT 568
|||||||||||
Sbjct 635 GTATTCAACTTT 646
> AT3G53340.1 | Symbols: NF-YB10 | nuclear factor Y, subunit B10
| chr3:19774331-19776205 REVERSE LENGTH=1001
Length=1001
Score = 529 bits (286), Expect = 1e-149
Identities = 441/512 (86%), Gaps = 26/512 (5%)
Strand=Plus/Plus
Query 55 GTGGAAGCCATGAGAGTGGTGGAGATCAAAGTCCGAGGTCGTT-ACATGTTCGTGAGCAA 113
||||||||||||||||||| || ||||| || |||||||| || | |||||||||||||
Sbjct 166 GTGGAAGCCATGAGAGTGGCGGTGATCAGAGCCCGAGGTCTTTGA-ATGTTCGTGAGCAG 224
Query 114 GATAGGTTTCTTCCGATTGCTAACATAAGCCGTATCATGAAAAGAGGTCTT-CCTGCT-A 171
|| |||||||||||||||||||||||||||||||||||||| |||||| || ||| || |
Sbjct 225 GACAGGTTTCTTCCGATTGCTAACATAAGCCGTATCATGAAGAGAGGT-TTACCT-CTAA 282
Query 172 ATGGCAAAATTGCTAAAGATGCTAAGGAGATTGTGCAGGAATGTGTTTCTGAATTCATCA 231
|||||||||| |||||||||||||| |||| | ||||||||||||| |||||||||||||
Sbjct 283 ATGGCAAAATCGCTAAAGATGCTAAAGAGACTATGCAGGAATGTGTCTCTGAATTCATCA 342
Query 232 GCTTCATTACCAGCGAAGCGAGTGATAAATGTCAAAGAGAGAAAAGGAAGACCATCAATG 291
||||| | |||||||| || |||||||| || ||||||||||||||||||||||||||||
Sbjct 343 GCTTCGTCACCAGCGAGGCTAGTGATAAGTGCCAAAGAGAGAAAAGGAAGACCATCAATG 402
Query 292 GAGATGATTTGCTTTGGGCAATGGCCACTTTAGGATTTGAAGACTACATGGAACCCCTGA 351
||||||||||||||||||| ||||||||||||||||| ||||| ||||| || ||||| |
Sbjct 403 GAGATGATTTGCTTTGGGCTATGGCCACTTTAGGATTCGAAGATTACATCGATCCCCTCA 462
Query 352 AGGTTTACCTGATGAGATATAGAGAGATGGAGGGTGACAC-AAAGGGATCAGCAAAAGGT 410
|||||||||||||| ||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 463 AGGTTTACCTGATGCGATATAGAGAGATGGAGGGTGACACTAAAGG-ATCAGGAAAAGGC 521
Query 411 GGGGA-TGCAAATGCAAAGAAAGATGGGAAATCAAGCCAAAATGGC-CAGTTC--GC--- 463
||||| | | | |||||||| |||||| || |||||||| || | |||||| ||
Sbjct 522 GGGGAAT-CGAGTGCAAAGAGAGATGGTCAACCAAGCCAAG-TGTCTCAGTTCTCGCAGG 579
Query 464 T-CA-C--CAAGGCTCTTTTTCACAAGGTCCTTATGGGAACTCTCAAGCT-CAGCAGCAT 518
| | | |||||||| || ||||| ||||||||||| |||||||||| | | | | ||
Sbjct 580 TTCCTCAACAAGGCTCATTCTCACAGGGTCCTTATGGAAACTCTCAAGGTTC-G-A--AT 635
Query 519 ATGATGGTTCCAATGCCGGGAACAGACTAGTA 550
|||||||||| ||||||||| ||||| |||||
Sbjct 636 ATGATGGTTCAAATGCCGGGCACAGAGTAGTA 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27277141821
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5