BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934357
Length=1100
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37090.1 | Symbols: IRX9 | Nucleotide-diphospho-sugar transf... 1711 0.0
> AT2G37090.1 | Symbols: IRX9 | Nucleotide-diphospho-sugar transferases
superfamily protein | chr2:15587394-15589257 REVERSE
LENGTH=1367
Length=1367
Score = 1711 bits (926), Expect = 0.0
Identities = 1044/1102 (95%), Gaps = 4/1102 (0%)
Strand=Plus/Plus
Query 1 CTTCTTCCTTAAACAGAAGGTTATGGGATCTCTAGAGAGATCAAAGAAGAAAGCTCAAGT 60
|||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 CTTCTTCCTTGAAGAGAGGGTTATGGGATCTCTAGAGAGATCAAAGAAGAAAGCTCAAGT 72
Query 61 ATGGAAGAAAGCTGTGATCCAATTT-TCTCTTTGTTTTGTAATGGGTTTCTTCACTGGCT 119
|||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||
Sbjct 73 ATGGAAGAAAGCTGTGATCC-ATTTCTCTCTATGTTTTGTAATGGGTTTCTTCACTGGCT 131
Query 120 TTGCTCCTGCTGGTAAGGCCTCATTTTTCTCTAATTCCGAAACCACCCCCTATACTTCTA 179
| |||||||||||||||||||||||||||||||||| |||||| || | ||||||||||
Sbjct 132 TCGCTCCTGCTGGTAAGGCCTCATTTTTCTCTAATTTCGAAACGACTTCTTATACTTCTA 191
Query 180 CAAAATCTCAAATTTCTCCCCAACCTTTTGAAAACTCTACCTACACACCCCATTCCCTCC 239
||||||||| ||| |||||||||||||||||||| |||| ||||||| ||||||||||
Sbjct 192 CAAAATCTCCGATTCCTCCCCAACCTTTTGAAAACGCTACATACACACAACATTCCCTCC 251
Query 240 TCAATAGAACCTTGACCAATTCCCAAGGCCAAGCCCCAGCTCCCGCAGAGTGGCGAGAAG 299
||||||||||||||| |||||||||| ||||||| |||||||||||||||| ||||||||
Sbjct 252 TCAATAGAACCTTGATCAATTCCCAAAGCCAAGCTCCAGCTCCCGCAGAGTCGCGAGAAG 311
Query 300 CCGAAGCAGAAACCAGATCTCTCTCCGAGACAGAAGATGAGAACCAAGTTAAAGTGACAC 359
| |||| |||||| |||||||||||||||| |||||||||||| ||||| ||||||||||
Sbjct 312 CTGAAGGAGAAACAAGATCTCTCTCCGAGAAAGAAGATGAGAATCAAGTAAAAGTGACAC 371
Query 360 CAAGAGGACTAGTGATTGTTGTAACTCCAATAATAACGAAAGATCGCTACAAAAATGTTC 419
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 372 CAAGAGGACTAGTGATTGTTGTAACTCCAATAATAACTAAAGATCGCTACAAAAACGTTC 431
Query 420 TTCTTAGGAGAATGGCCAATACATTGAGGCTAGTTCCACCTCCATTATTGTGGATAGTCG 479
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 432 TTCTTAGGAGAATGGCCAATACCTTGAGGCTAGTTCCACCTCCCTTATTGTGGATAGTCG 491
Query 480 TGGAGAAACACTCAGAT-GCTGAAGAAAAATCTTCATCTACAATGTTAAGAAAGACCGGT 538
|||| |||||||| ||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 492 TGGAAAAACACTCGGATGGC-GAAGAAAAATCTTCGTCTACAATGTTAAGAAAGACCGGT 550
Query 539 ATCATGTATAGACGTATAGTCTTCAAGGAGGATTTCACAAGCTTGGAATCAGAGCTTGAT 598
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 551 ATCATGTATAGACGTATAGTCTTCAAGGAAGATTTCACAAGCTTAGAATCAGAGCTTGAT 610
Query 599 CATCAAAGGAATTTAGCGTTAAGACACATTGAACATCACAAATTAAGCGGGATAGTTCAT 658
|||||||||||| |||| || || |||||||||||||||||||||||||| |||||||||
Sbjct 611 CATCAAAGGAATCTAGCTTTGAGGCACATTGAACATCACAAATTAAGCGGAATAGTTCAT 670
Query 659 TTCGCGGGACTAAACAACATATATGATCTTGATTTTTTCGACAAGATCAGAGATATCGAG 718
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 671 TTTGCGGGACTAAACAACATATATGATCTTGATTTTTTCGTCAAGATCAGAGATATCGAG 730
Query 719 GTATTCGGTACTTGGCCAATGGCATTGCTATCGGCTAATAGGAAACGAGTGATAGTAGAG 778
||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 731 GTATTTGGTACTTGGCCAATGGCATTGTTATCGGCTAATAGGAAACGAGTGGTAGTAGAA 790
Query 779 GGGCCGGTTTGTGAATCTTCACAAGTATTGGGGTGGCATTTGAGAAAAATTAATAACGAG 838
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 GGGCCTGTTTGTGAATCTTCACAAGTATTGGGGTGGCATTTGAGAAAAATTAATAACGAG 850
Query 839 ACAGAGACAAAGCCTCCGATTCATATATCAAGTTTCGCTTTCAATAGTTCCATACTTTGG 898
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 851 ACAGAGACAAAGCCTCCGATTCATATATCAAGCTTCGCTTTCAATAGTTCCATACTTTGG 910
Query 899 GACCCTGAGAGATGGGGTCGTCCTTCTTCTGTTGAAGGCACCAAACAGGATTCGATAAAA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 GACCCTGAGAGATGGGGTCGTCCTTCTTCTGTTGAAGGCACCAAACAGGATTCGATAAAA 970
Query 959 TATGTGAAGCAAGTAGTTTTGGAGGACGATACAAAGTTGAAGGGACTTCCGGCACAAGAC 1018
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 TATGTGAAGCAAGTAGTTTTGGAGGACGATACAAAGTTGAAGGGACTTCCGGCACAAGAT 1030
Query 1019 TGTTCCAAGATTATGCTTTGGCGTCTCAATTTTCCCACAAGAACACGTTTAAGCCCCTGA 1078
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1031 TGTTCCAAGATTATGCTTTGGCGTCTCAAATTTCCCACAAGAACACGTTTAAGCACCTGA 1090
Query 1079 TATGCTTTATTTTATTCTAATC 1100
| |||||||||| |||||||||
Sbjct 1091 TTTGCTTTATTTCATTCTAATC 1112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53915385330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5