BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934359
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37110.1 | Symbols: | PLAC8 family protein | chr2:15592552-... 1184 0.0
> AT2G37110.1 | Symbols: | PLAC8 family protein | chr2:15592552-15594014
FORWARD LENGTH=1154
Length=1154
Score = 1184 bits (641), Expect = 0.0
Identities = 745/796 (94%), Gaps = 4/796 (1%)
Strand=Plus/Plus
Query 3 ATCGTCTTGTCCAGA-TTGATCTTGCGTTAA-TTTCTAAGCACAATATGGCGGCAGAAGA 60
||||| |||| |||| ||||||||||||||| |||||||||| |||||||||| ||||||
Sbjct 92 ATCGTTTTGTGCAGATTTGATCTTGCGTTAATTTTCTAAGCAAAATATGGCGGGAGAAGA 151
Query 61 TAGCCGTGAAGCTCAACGAGGCGACGAACATGAGGAATCGAGTCCTCTCTTGCAGGGGAA 120
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||
Sbjct 152 TAGCCGTGAAGCTCAACGAGGCGACGAATATGAGGAATCGAGTCCTCTCTTGAAGGTGAA 211
Query 121 AGAGAACGACGGCAAGATCTGCTCGAAAGGAGATTCCAAGGCGGCGTCGCTTGTGCCTCC 180
||||| ||||||||||||||||||||| ||||| ||||||||||| | |||||||||||
Sbjct 212 CGAGAATGACGGCAAGATCTGCTCGAAAAGAGATGCCAAGGCGGCGCCTCTTGTGCCTCC 271
Query 181 TCCCGCGGCAGAGGAATACGGTTGGACGGCGGATGGATTGCCGGTGAGCCAGGGGAGCGT 240
||||||||| ||||||||||| |||||||||||||||||||| |||||||| || |||||
Sbjct 272 TCCCGCGGCGGAGGAATACGGCTGGACGGCGGATGGATTGCCTGTGAGCCATGGTAGCGT 331
Query 241 GATTGGCGAGCCGATCAGGAGAAATCAGTGGAATTCGGGTCTGTTTACCTGT-TTAGGCC 299
|||||||||||||||||||||||| ||||||||||| ||||| ||||||||| || || |
Sbjct 332 GATTGGCGAGCCGATCAGGAGAAACCAGTGGAATTCTGGTCTTTTTACCTGTCTT-GGTC 390
Query 300 GCAATGATGAATTTTGCAGCAGCGATCTCGAAGTTTGTCTTCTTGGAAGTGTGGCTCCAT 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 391 GCAATGATGAATTTTGCAGCAGCGATCTCGAAGTTTGTCTTCTTGGAAGTGTGGCTCCTT 450
Query 360 GTGTGTTGTATGGAACTAATGCAGAGAGACTTGGCTCTGCTCCGGGAACATTTTCAAACC 419
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 451 GTGTGTTGTATGGAACTAATGCAGAGAGACTTGGGTCTGCTCCGGGAACATTTTCAAACC 510
Query 420 ATTGCTTGACGTATTTGGGATTGTACTTTGTTGGTAATTCTTTGTTTGGCTGGAACTGCC 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 511 ATTGCTTGACGTATTTGGGATTGTACTTTGTTGGTAATTCTTTGTTTGGCTGGAACTGTC 570
Query 480 TTGCTCCCTGGTTCTCTTATTCTAGCCGTTCTGCTATTCGCCGAAAGTTTAACCTTGAGG 539
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 TTGCTCCATGGTTCTCTTATTCTAGCCGTTCTGCTATTCGCCGAAAGTTTAACCTTGAGG 630
Query 540 GAAGTTTTGAGGCTATGAACAGGTCGTGTGGTTGCTGCGGTAGCTGCATAGAAGACGAGA 599
|||| |||||||||||||||||||| ||||||||||||||| |||||||||| |||||||
Sbjct 631 GAAGCTTTGAGGCTATGAACAGGTCTTGTGGTTGCTGCGGTGGCTGCATAGAGGACGAGA 690
Query 600 TGCAAAGGGAACACTTGGAGACAACTTGTGACTTTGTGACACATGTCCTATGTCATACAT 659
|||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 691 TGCAAAGGGAACACTTGGAGACGACTTGTGACTTTGTGACACATGTCCTTTGCCATACAT 750
Query 660 GTGCACTTTGCCAAGAAGGCCGGGAGCTCCGCAGGAAGGTTCTTCACCCGGGTTTCAATG 719
|||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 751 GTGCCCTTTGCCAAGAAGGGCGTGAGCTCCGCAGGAAGGTTCTTCACCCAGGTTTCAATG 810
Query 720 CTCAGTCCACCGTGGTCATGATGCCACCTAGAGAGCAAACCATGGGTCGTAAATGAAGCT 779
||||||||||||| || |||||||||| | ||| ||||||||||||||||| |||||||
Sbjct 811 CTCAGTCCACCGTTGTTGTGATGCCACCCATAGAACAAACCATGGGTCGTAAGTGAAGCT 870
Query 780 TGCTTTGAGTCGAGTG 795
| | | ||||||||||
Sbjct 871 TACATAGAGTCGAGTG 886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38680293190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5