BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934360

Length=277
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G37120.1 | Symbols:  | S1FA-like DNA-binding protein | chr2:...   394    2e-109


> AT2G37120.1 | Symbols:  | S1FA-like DNA-binding protein | chr2:15594030-15594961 
REVERSE LENGTH=597
Length=597

 Score =  394 bits (213),  Expect = 2e-109
 Identities = 251/269 (93%), Gaps = 4/269 (1%)
 Strand=Plus/Plus

Query  1    TCTCAGATTTCCGGAT-CGTAGCCATGAGCAGTGAAGGTTCCGCCGGAAAGGCGGCTGTT  59
            |||||||||||||||| | |||||||||||||||| ||||||||||||||||||| ||||
Sbjct  124  TCTCAGATTTCCGGATAC-TAGCCATGAGCAGTGATGGTTCCGCCGGAAAGGCGGTTGTT  182

Query  60   GAAGCTAAAGGATTGAACCCGGGGTTGATAGTGTTGCTTGTTGTTGGAGGCCTGCTTGTG  119
            ||||| |||||||||||||| || ||||||||| |||||||| ||||||| |||||||||
Sbjct  183  GAAGCCAAAGGATTGAACCCTGGATTGATAGTGCTGCTTGTTATTGGAGGTCTGCTTGTG  242

Query  120  ACA-TTCTTGATAGCCAATTACGTGATGTACATGTATGCTCAGAAGAATCTACCCCCAAA  178
            ||| ||| | |||||||||||||| ||||||||||||||||||||||||||||| |||| 
Sbjct  243  ACATTTC-TCATAGCCAATTACGTTATGTACATGTATGCTCAGAAGAATCTACCTCCAAG  301

Query  179  GAAGAAGAAGCCTCTTTCCAAAAAGAAGCTCAAGCGTGAGAAGCTGAAGCAGGGAGTCCC  238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  302  GAAGAAGAAGCCTCTTTCCAAAAAGAAGCTCAAGCGTGAGAAGCTGAAGCAGGGAGTCCC  361

Query  239  CGTGCCCGGCGAATAGATTTCAGCTTCTT  267
             |||||||||||||||||| |||||||||
Sbjct  362  TGTGCCCGGCGAATAGATTCCAGCTTCTT  390



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12717740497


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5