BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934367
Length=542
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37190.1 | Symbols: | Ribosomal protein L11 family protein ... 815 0.0
AT5G60670.1 | Symbols: | Ribosomal protein L11 family protein ... 468 3e-131
> AT2G37190.1 | Symbols: | Ribosomal protein L11 family protein
| chr2:15619407-15620119 REVERSE LENGTH=713
Length=713
Score = 815 bits (441), Expect = 0.0
Identities = 509/542 (94%), Gaps = 3/542 (1%)
Strand=Plus/Plus
Query 1 AATCCGAGACAGCAGCAACAATGCCGCCGAAGTTGGATCCGAGTCAGATCGTTGAGGTCT 60
||||||||||| | | ||||||||||| |||||||||||||||||||||||||| || |
Sbjct 44 AATCCGAGACATC--C-ACAATGCCGCCAAAGTTGGATCCGAGTCAGATCGTTGACGTGT 100
Query 61 ACGTCCGTGTAACCGGAGGAGAAGTCGGAGCAGCGAGTTCTCTAGCTCCCAAAATCGGTC 120
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 ACGTCCGAGTAACCGGGGGAGAAGTCGGAGCAGCGAGTTCTCTAGCTCCCAAAATCGGTC 160
Query 121 CGCTAGGTCTTGCACCAAAGAAGATCGGAGAAGATATCGCGAAAGAAACCGCCAAGGAAT 180
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 161 CGCTAGGTCTCGCACCAAAGAAGATCGGAGAAGATATCGCGAAAGAAACCGCAAAGGAAT 220
Query 181 GGAAAGGATTACGTGTCACTGTCAAGCTAACGGTGCAGAATCGTCAAGCTAAAGTCTCGG 240
|||||||||||||||| || |||||||| || |||||||||||||| || ||||| |||
Sbjct 221 GGAAAGGATTACGTGTAACCGTCAAGCTCACAGTGCAGAATCGTCAGGCGAAAGTGACGG 280
Query 241 TGGTTCCATCAGCAGCTGCACTCGTCATCAAGGCGTTGAAAGAGCCGGAGAGAGATAGGA 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 TGGTTCCATCAGCAGCAGCACTCGTCATCAAGGCGTTGAAAGAGCCGGAGAGAGATAGGA 340
Query 301 AGAAGGTGAAGAACATTAAACACAATGGGAATATTTCGTTTGATGATGTGATTGAGATTG 360
||||||||||||||||||| || || ||||| || |||||||||||||||| ||||||||
Sbjct 341 AGAAGGTGAAGAACATTAAGCATAACGGGAACATCTCGTTTGATGATGTGACTGAGATTG 400
Query 361 CTAGGATCATGAGACCTAGATCTATTGCTAAGGAATTGAGTGGAACTGTGAGAGAGATTC 420
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 401 CTAGGATCATGAGACCTAGATCTATTGCTAAGGAATTGAGTGGAACAGTGAGGGAGATTC 460
Query 421 TGGGGACTTGTGTATCTGTTGGTTGTACTGTGGATGGGAAAGATCCTAAAGATATTCAAC 480
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 TGGGAACTTGTGTGTCTGTTGGTTGTACTGTGGATGGGAAAGATCCTAAAGATATTCAAC 520
Query 481 AGGAGATTCAAGATGGTGAAGTTGAGATTCCTGAGAATTGAAGAATTTGGAAATGGTGTT 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 521 AGGAGATTCAAGATGGTGAAGTTGAGATTCCTGAGAACTGAAGAATTTGGAAATGATGGT 580
Query 541 GT 542
||
Sbjct 581 GT 582
> AT5G60670.1 | Symbols: | Ribosomal protein L11 family protein
| chr5:24380910-24381593 REVERSE LENGTH=684
Length=684
Score = 468 bits (253), Expect = 3e-131
Identities = 419/499 (84%), Gaps = 12/499 (2%)
Strand=Plus/Plus
Query 20 AATGCCGCCGAAGTTGGATCCGA-GTCAGATCGTTGAGGTCTACGTCCGTGTAACCGGAG 78
|||||||||||| |||||||| | ||| ||||| || ||||||||||| || |||||||
Sbjct 27 AATGCCGCCGAAATTGGATCC-ATCTCAAATCGTCGACGTCTACGTCCGAGTCACCGGAG 85
Query 79 GAGAAGTCGGAGCAGCGAGTTCTCTAGCTCCCAAA-ATCGGTCCGCTAGGTCTTGCACCA 137
| || |||||||||||| ||| || ||| ||||| |||||||| || ||||| ||||||
Sbjct 86 GTGAGGTCGGAGCAGCGTCTTCACTCGCT-CCAAAGATCGGTCCACTCGGTCTGGCACCA 144
Query 138 AAGAAGATCGGAGAAGATATCGCGAAAGAAACCGCCAAGGAATGGAAAGGAT-TACGTGT 196
||||||||||||||||| ||||| ||||| || || || ||||||||||| | | || ||
Sbjct 145 AAGAAGATCGGAGAAGACATCGCCAAAGAGACAGCGAAAGAATGGAAAGG-TCTTCGAGT 203
Query 197 CACTGTCAAGCTAACGGTGCAGAATCGTCAAGCTAAAGTCTCGGTGGTTCCATCAGCAGC 256
||| || ||||| ||||| ||||||||||||||||| ||| | ||||||||||| |||||
Sbjct 204 CACCGTGAAGCTTACGGTACAGAATCGTCAAGCTAAGGTCACAGTGGTTCCATCCGCAGC 263
Query 257 TGCACTCGTCATCAAGGCGTTGAAAGAGCCGGAGAGAGATAGGAAGAAGGTGAAGAACAT 316
|| || |||||||| || | || ||||| ||||||||||||||||| |||||||||||
Sbjct 264 GGCTCTAGTCATCAAAGCCCTCAAGGAGCCAGAGAGAGATAGGAAGAAAGTGAAGAACAT 323
Query 317 TAAACACAATGGGAATATTTCGTTTGATGATGTGATTGAGATTGCTAGGATCATGAGACC 376
||||| ||||| || ||||||||||||||||||||||||||||||| ||| ||| | ||
Sbjct 324 CAAACATAATGGCAACATTTCGTTTGATGATGTGATTGAGATTGCTAAGATAATGCGTCC 383
Query 377 TAGATCTATTGCTAAGGAATTGAGTGGAACTGTGAGAG-AGATTCTGGGGACTTGTGTAT 435
||||||||| |||||||||||||||||||| |||| || ||||| | || |||||||| |
Sbjct 384 TAGATCTATCGCTAAGGAATTGAGTGGAACAGTGA-AGGAGATTTTAGGAACTTGTGTCT 442
Query 436 CTGTTGGTTGTACTGTGGATGGGAAAGATCCTAAAGATATTCAACAGGAGATTCA-AGAT 494
|||||||||| ||||| ||||| ||||| ||||| ||| |||| | || ||| | || |
Sbjct 443 CTGTTGGTTGCACTGTTGATGGTAAAGACCCTAAGGATCTTCAGGAAGAAATTAACAG-T 501
Query 495 GGTGA-AGTTGAGATTCCT 512
||||| | |||| ||||||
Sbjct 502 GGTGACA-TTGATATTCCT 519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25971053999
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5