BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934368
Length=437
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37195.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 695 0.0
> AT2G37195.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 23 Blast hits to 23
proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:15620349-15621632 FORWARD LENGTH=591
Length=591
Score = 695 bits (376), Expect = 0.0
Identities = 415/433 (96%), Gaps = 6/433 (1%)
Strand=Plus/Plus
Query 11 GAGGAGGAAGAATGGCGGGAGGATCTGAGAGAAAGACGATACTGGTGGGTTTGGTTCTAG 70
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 11 GAGGAGGAAGAATGGCGGGAGGATCTGAGAGGAAGACGATACTGGTGGGTTTGGTTCTAG 70
Query 71 CTCTTGTTCTTGGTATCGCTGTTTACTTAAGGCTTTGGACTATCGATTATACTCTATCTT 130
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 71 CTCTTGTTCTTGGTATCGGTGTTTACTTAAGGCTTTGGACTATCGATTATACTCTATCTT 130
Query 131 CCGATGACACAGAACGCTTAAGGAGACAGTTTGATTTGGCAAATAGAGAGGCAATGGATG 190
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 CCGATGACACAGAGCGCTTAAGGAGACAGTTTGATTTGGCAAATAGAGAGGCAATGGATG 190
Query 191 AATCTGCAGAATGGCGGAGAATGTTTGATAAGGAAGCTGAGAAAGCTTCTAAATGTAACA 250
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 AATCTGCAGATTGGCGGAGAATGTTTGATAAGGAAGCTGAGAAAGCTTCTAAATGTAACA 250
Query 251 CAGAACTTGCTCTGATCAAAGAGTCATCTGGGAATGGAAACAC-TTT-C----AATCAAA 304
|||||||| | |||||||||||||||||||||||||||||||| ||| | |||||||
Sbjct 251 CAGAACTTTCACTGATCAAAGAGTCATCTGGGAATGGAAACACCTTTACCTCCAATCAAA 310
Query 305 AGCTGGAGTCATTACAAAAGGAAAATGCGGCATTGCTCATTCGAATAGAGACATTAAAAC 364
|||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 311 AGCTAGAGTCATTAAAAAAGGAAAATGCGGCATTGCTCATTCAAATAGAGACATTAAAAC 370
Query 365 AAGAGCTTGAAGCTTCCCGGTTAAAGTGCCACTCACGACAGGCACCCCGTTAGGATACTG 424
|||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 371 AAGAGCTTGAAGCTTCACGGTTAAAGTGCCACTCACGGCAGGCACCCCGTTAGAATACTG 430
Query 425 TTCTTGATATGTT 437
|||||||||||||
Sbjct 431 TTCTTGATATGTT 443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20760580337
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5