BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934369

Length=583
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G37200.1 | Symbols:  | Uncharacterised protein family (UPF04...   874    0.0  


> AT2G37200.1 | Symbols:  | Uncharacterised protein family (UPF0497) 
| chr2:15621954-15623097 REVERSE LENGTH=737
Length=737

 Score =  874 bits (473),  Expect = 0.0
 Identities = 524/549 (95%), Gaps = 2/549 (0%)
 Strand=Plus/Plus

Query  21   ATGATGAACGTGAGCCGGCCGGCGATTCACCCGGTCGATGCGCTTCCGGTGGCTCCGACT  80
            ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct  51   ATGATGAACGTGAGCCGGCCGGCGATTCACCCGGTTGATGCTCTTCCGGTGGCTCCTACT  110

Query  81   ACCGGAGCGATCGATAGACCACCAGTGAGGATGAAGGATGTGCAAGGCATGCCCGGAACC  140
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  111  GCCGGAGCGATCGATAGACCACCAGTGAGGATGAAGGATGTGCAAGGCATGCCCGGAACC  170

Query  141  ACCGGCGGTCTCATCCTCCGTCTCTCTCAGTTCGT-CCCAGCTCTTATCTCCGTCTCCGT  199
            ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct  171  ACCGGCGGTCTCATCCTCCGTCTCTCTCAGTTCGTTCCC-GCTCTTATCTCCGTCTCCGT  229

Query  200  CATGGTCACCACCTCCGACTTCCGCTCCGCCACCGCATTCTGTTGCTTGGTTCTTGCGGT  259
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  230  CATGGTCACTACCTCCGACTTCCGCTCCGCCACCGCATTCTGTTGCTTGGTTCTTGCGGT  289

Query  260  CAGCCTGCAAAGCATGTGGAGCTTGTCTCTATTTCTCGTCGATGCTTATGCTCTACTGGT  319
             |||||||||||| |||||||||||||||| ||| |  |||||||||||||||| |||||
Sbjct  290  TAGCCTGCAAAGCCTGTGGAGCTTGTCTCTTTTTATTATCGATGCTTATGCTCTTCTGGT  349

Query  320  GAGAAGAAGCCTTCGGAATCACTCTGTTGTTCAGTGTTTCACTATTGGAGATGGTGTCAC  379
            ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct  350  GAGAAGAAGCCTTCGAAATCACTCCGTTGTTCAGTGTTTCACTATTGGAGATGGAGTCAC  409

Query  380  ATCGACCCTTACGTTTGCAGCTGCATCTGCGTCTGCTGGCATAACCGTACTCATCAACGA  439
            |||||| || |||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct  410  ATCGACGCTCACGTTTGCAGCTGCATCTGCTTCTGCTGGCATAACTGTACTCATCAACGA  469

Query  440  TCTTGGACAATGTAATGTGAATCACTGCACAAGGTTTGAGACCGCCACAGCAATGGCTTT  499
            ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct  470  TCTTGGACAATGTAACGTGAATCACTGCACAAGGTTTGAGACTGCCACAGCAATGGCCTT  529

Query  500  CATCAGCTGGTTTGCTGTGTCTCCTTCCTTTATTCTCAACTTCTGGTCCTTAGCCACCCA  559
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  530  CATCAGCTGGTTTGCTGTGTCTCCTTCCTTTATTCTCAACTTCTGGTCCTTAGCCACCCA  589

Query  560  TTAAATATA  568
             ||||||||
Sbjct  590  CTAAATATA  598



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28030654026


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5