BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934372
Length=2315
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3607 0.0
> AT2G37230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:15637046-15639522 REVERSE LENGTH=2477
Length=2477
Score = 3607 bits (1953), Expect = 0.0
Identities = 2200/2320 (95%), Gaps = 13/2320 (1%)
Strand=Plus/Plus
Query 3 AAGATTCCATTTCCTGTAATGGCTTTCATTTCCAGATCTAAACCCTATCAATCGAGAGCT 62
||| ||||||||||||||||||||||||||||||||||||||| ||| ||||| | ||||
Sbjct 55 AAGGTTCCATTTCCTGTAATGGCTTTCATTTCCAGATCTAAACGCTACCAATCAAAAGCT 114
Query 63 AGGGTTTATCTCTCGCTTCCCAGATCCTCAGACTCGTCTTTCTTCTCATTCCCTCGTTTA 122
|||||||||||||||||||||||||| ||| |||| ||| |||||||| |||||||| ||
Sbjct 115 AGGGTTTATCTCTCGCTTCCCAGATCATCAAACTCATCTCTCTTCTCACTCCCTCGTCTA 174
Query 123 TTCAGCTCAATCGAAGAAACCCAAACTTCAGGC-GACGCAAACCCAGAAACCCAATCTCC 181
|||||| | |||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 175 TTCAGCACCATCGAAGAAACCCAAACTCCA-GCAAACGCAAACCCAGAAACCCAATCTCC 233
Query 182 AGATGCGAAACCCGAGAC---GAAGAATCTGGGTTCTACAGAGACGAGGCCACTCAGAGA 238
|||||| ||| ||||||| |||||||||| ||||||||||||||| |||||||||||
Sbjct 234 AGATGCAAAATCCGAGACGAAGAAGAATCTGACTTCTACAGAGACGAGACCACTCAGAGA 293
Query 239 GCGATTCCAACGAGGTAAGCGTCAAAACCATGAAAAGCTTGAGGATACAATTTGTAGAAT 298
| | ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 294 GAGGTTCCAACGAGGTAAGCGTCAAAACCATGAAAAGCTAGAGGATACAATATGTAGAAT 353
Query 299 GATGGATAATCGTGCTTGGACGACCCGTTTACAGAACTCGATCCGAGATCTTGTACCTGA 358
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 354 GATGGATAATCGTGCTTGGACGACTCGTTTACAGAACTCAATCCGAGATCTTGTACCTGA 413
Query 359 ATGGGATCATTCTTTAGTGTATAATGTGTTGCACGGTGCTAAGAAACTTGAGCACGCTCT 418
|||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 414 ATGGGATCATTCTTTAGTCTATAATGTATTGCACGGTGCTAAGAAACTTGAGCATGCTCT 473
Query 419 TCAGTTTTTCCGGTGGACGGAGAGATCTGGATTGATTCGTCATGATAGAGATACACATAT 478
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TCAATTTTTCCGGTGGACGGAGAGATCTGGATTGATTCGTCATGATAGAGATACACATAT 533
Query 479 GAAGATGATTAAGATGCTTGGAGAGG-TTCAGAAGCTTAATCATGCTCGGTGTATTTTAT 537
||| |||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||
Sbjct 534 GAAAATGATTAAGATGCTTGGAGAGGTTTC-GAAGCTTAATCATGCTAGGTGTATTTTAT 592
Query 538 TGGATATGCCTGAAAAAGGTGTTCCTTGGGATGAAGATATGTTTGTGGTGCTTATTGAGA 597
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 593 TGGATATGCCTGAAAAGGGTGTTCCTTGGGATGAGGATATGTTTGTGGTGCTTATTGAGA 652
Query 598 GTTATGGCAAAGCTGGGATTGTTCAAGAGTCTGTTAAAATCTTTCAGAAGATGAAGGATT 657
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GTTATGGAAAAGCTGGGATTGTTCAAGAGTCTGTTAAAATCTTTCAGAAGATGAAGGATT 712
Query 658 TGGGTGTGGAGAGGACGATTAAGTCGTATAATACTTTGTTTAAGGTGATTTTGAGGCGTG 717
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 713 TGGGTGTGGAGAGGACGATTAAGTCGTATAATAGTTTGTTTAAGGTGATTTTGAGGCGTG 772
Query 718 GTCGGTATATGATGGCGAAACGGTATTTCAATAAGATGGTTAGTGAGGGTATAGAGCCTA 777
|| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 773 GTAGGTATATGATGGCGAAACGGTATTTCAATAAGATGGTTAGTGAGGGTGTTGAGCCAA 832
Query 778 CTCGGCATACTTATAATCTAATGCTTTGGGGGTTCTTTTTGTCTTTGAGGCTT-GAGACT 836
| |||||||||||||||||||||| |||||||||||||||||||||||| || ||||||
Sbjct 833 CGAGGCATACTTATAATCTAATGCTGTGGGGGTTCTTTTTGTCTTTGAGG-TTAGAGACT 891
Query 837 GCTTTGAGGTTTTTTGATGATATGAAAACTCGTGGGATCTCGCCGGATGCTGTTAC-TTA 895
||| ||||||| ||||| |||||||||||| | |||||||||||||||| || ||| ||
Sbjct 892 GCTCTGAGGTTCTTTGAAGATATGAAAACTAGAGGGATCTCGCCGGATGATGCTACGTT- 950
Query 896 CAATACTATGATCAATGGGTACTGTCGGTTTAAGAAGATGGATGAGGCAGAGAAGTTATT 955
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||
Sbjct 951 TAATACTATGATCAATGGGTTCTGCCGGTTTAAGAAGATGGATGAGGCAGAGAAGTTGTT 1010
Query 956 TGTGGAGATGAAAGGGAATAATAGTGAGCCTAGTGTTGTGAGTTACACCACCATGATTAA 1015
||||||||||||||||||||| | || |||||||||||||||||||||||| ||||||||
Sbjct 1011 TGTGGAGATGAAAGGGAATAAGATTGGGCCTAGTGTTGTGAGTTACACCACGATGATTAA 1070
Query 1016 AGGATATCTTTCAGTTGACCGAGTTGATGATGGGTTGAGAATCTTTGAGGAGATGAGATC 1075
|||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 AGGATATCTTGCGGTGGACCGAGTTGATGATGGGTTGAGAATCTTTGAGGAGATGAGATC 1130
Query 1076 TTTTGGTATTGAGCCCAATGCTACGACGTATTCTACATTGTTGCCAGGTCTGTGTGATGC 1135
|| |||||||||||| |||||||| |||||||| || |||||||| ||||||||||||||
Sbjct 1131 TTCTGGTATTGAGCCTAATGCTACTACGTATTCGACGTTGTTGCCTGGTCTGTGTGATGC 1190
Query 1136 AGGGAAAATGGTGGAGGCTAAGAATATCTTGAAGAATATGATGGCCAAACACATTGCTCC 1195
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1191 AGGGAAAATGGTGGAGGCTAAGAATATCTTGAAGAATATGATGGCGAAACACATTGCTCC 1250
Query 1196 GAAAGATAACTCAATCTTCCTTAAGCTTTTGGTTTCTCAGAGTAAAGCTGGGGATATGGC 1255
||||||||||| ||||| |||||||||||||| |||||||| ||||| |||||||||||
Sbjct 1251 AAAAGATAACTCGATCTTTCTTAAGCTTTTGGTGTCTCAGAGCAAAGCAGGGGATATGGC 1310
Query 1256 GGCAGCCACTGAGGTGCTCAAAGCCATGGCTACACTGAACGTTCCAGCAGAAGCGGGACA 1315
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1311 GGCAGCCACTGAGGTGCTCAAAGCCATGGCTACACTGAATGTTCCAGCAGAGGCGGGACA 1370
Query 1316 CTATGGGGTCTTGATTGAGAATCAATGCAAGGCTAGTGCATACAATCGTGCTATCAAGCT 1375
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1371 CTATGGGGTTTTGATTGAGAACCAATGCAAGGCTAGTGCATACAATCGTGCTATCAAGCT 1430
Query 1376 TTTAGATACGCTTATTGAGAAAGAAATCATTTTGAGGCATCAGGATACTCTGGAAATGGA 1435
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1431 TTTAGATACGCTTATTGAGAAAGAAATCATATTGAGGCATCAGGATACTCTGGAAATGGA 1490
Query 1436 GCCCAGCGCATACAACCCGATTATCGAGTATTTGTGCAACAATGGCCAAACGGCGAAAGC 1495
||||||||| |||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 1491 GCCCAGCGCTTACAACCCAATAATCGAGTATTTGTGCAACAATGGCCAAACGGCAAAAGC 1550
Query 1496 AGAAGTGCTTTTCAGGCAGCTGATGAAAAGAGGTGTCCAAGACCAAGATGCCTTAAACAA 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 AGAAGTGCTTTTCAGGCAGCTGATGAAAAGAGGTGTCCAAGACCAAGATGCCTTAAACAA 1610
Query 1556 TCTAATCCGTGGTCATGCAAAGGAAGGAAACCCGGATTCTAGTTACGAGATTCTGAAGAT 1615
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1611 TCTAATCCGTGGTCATGCAAAGGAAGGAAACCCAGACTCTAGTTACGAGATTCTGAAGAT 1670
Query 1616 TATGTCGAGGAGAGGTGTCCCTAGAGAAGCAAACGCATATGAACTGCTCATCAAGAGCTA 1675
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1671 AATGTCGAGGAGAGGTGTCCCTAGAGAATCAAACGCATATGAGCTGCTCATCAAGAGCTA 1730
Query 1676 CATGAGCAAAGGTGAGCCTGGAGACGCGAAAACCGCACTGGACAGCATGGTCGAAGACGG 1735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 CATGAGCAAAGGTGAGCCTGGAGACGCGAAAACCGCACTGGACAGCATGGTCGAAGACGG 1790
Query 1736 GCATGTCCCAGATTCAGCACTTTTCAGGTCAGTGATTGAGAGTTTGTTTGAGGATGGTAG 1795
|||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1791 GCATGTCCCAGACTCATCGCTTTTCAGGTCAGTGATTGAGAGTTTGTTCGAGGATGGTAG 1850
Query 1796 GGTGCAGACAGCAAGCCGTGTGATGATGATCATGATAGATAAAAACGTTGGTATCGAAGA 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GGTGCAGACAGCAAGCCGTGTGATGATGATCATGATAGATAAAAACGTTGGTATCGAAGA 1910
Query 1856 AAACATGGATTTGATTGCCAAGATCTTGGAAGCTCTCTTAATGAGAGGACACGTAGAAGA 1915
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1911 CAACATGGATTTGATTGCCAAGATCTTGGAAGCCCTCTTAATGAGAGGACACGTAGAAGA 1970
Query 1916 AGCCCTGGGACGTATAGATCTTCTGAACCAAAACGGACACACAGCTGATCTGGACAGCCT 1975
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1971 AGCCCTGGGGCGTATAGATCTTCTGAACCAAAACGGACACACAGCTGATCTGGACAGCCT 2030
Query 1976 CTTATCTGTCTTAAGCGAGAAAGGGAAGACGATTGCAGCATTGAAGCTGTTAGATTTCGG 2035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2031 CTTATCTGTCTTAAGCGAGAAAGGGAAGACGATTGCAGCATTGAAGCTGTTAGATTTCGG 2090
Query 2036 GTTGGAGAGGGATCTCAGCTTAGATTTTTCGAGCTACGACAAAGTGTTGGATGCGCTTTT 2095
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2091 GTTGGAGAGAGATCTCAGCTTAGAGTTTTCGAGCTACGACAAAGTGTTGGATGCGCTTTT 2150
Query 2096 AGGAGCCGGGAAGACTCTGAATGCGTACTCGGTTCTGTGTAAGATCATGGAGAAAGGAAG 2155
|||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 2151 AGGAGCTGGGAAGACTCTGAATGCGTACTCAGTTCTTTGTAAGATCATGGAGAAAGGAAG 2210
Query 2156 TTCAACAGATTGGAAGAGCTCTGATGAACTGATCAAGAGCTTGAACCAAGAAGGAAACAC 2215
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2211 TTCAACAGATTGGAAGAGCTCTGATGAACTGATCAAAAGCTTGAACCAAGAAGGGAACAC 2270
Query 2216 AAAGCAAGCTGATGTTCTTTCTAGAATGATCAAGAAGGGACAAGGAATCAAGAAACAAAA 2275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2271 AAAGCAAGCTGATGTTCTTTCTAGAATGATCAAGAAGGGACAAGGAATCAAGAAACAAAA 2330
Query 2276 CACTGCTTCTCTATAGAAACTTCTTAACAAGTGATTCTTT 2315
|| || |||||||||||||||| || | ||||||||||
Sbjct 2331 CAATGTTTCTCTATAGAAACTTGACAA-A-GTGATTCTTT 2368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114909047505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5