BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934382
Length=2050
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37310.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3103 0.0
> AT2G37310.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr2:15664800-15667079 REVERSE LENGTH=2280
Length=2280
Score = 3103 bits (1680), Expect = 0.0
Identities = 1878/1976 (95%), Gaps = 4/1976 (0%)
Strand=Plus/Plus
Query 17 ATGAATGAAGTTGGGATTCGAAATTCAACGAGCCTTGCAAGGCTTGCTAAACAAAGCGGC 76
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGAATGAAGTTGGGATTCGAAATTCAACGAGCCTTGCAAGGCTTGCTAAACAAGGCGGC 60
Query 77 GGTCGACGGCGGCGCGTATGGTCACCTCATCCAGCACTTCACCCGTCACCGACTTCCTCT 136
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTCGACGGCGGTGCGTACGGTCACCTCATCCAGCACTTCACCCGTCACCGACTTCCTCT 120
Query 137 CCACGCGCTTCAGCTTCACGCGCGCATTGTCGTCTTCTCCATCGCGCCTGACAACTTCCT 196
||||| |||||||||||||||||| |||||||||||||||||| ||| |||||||||||
Sbjct 121 CCACGTGCTTCAGCTTCACGCGCGTATTGTCGTCTTCTCCATCAAGCCGGACAACTTCCT 180
Query 197 CGCTTCAAAGCTCATCAGTTTTTACACTAGGCAGAATCGCTTCCACCAAGCACTCCATGT 256
||| |||||||||||||||||||||||||||||| |||| |||| |||||||||||||||
Sbjct 181 CGCGTCAAAGCTCATCAGTTTTTACACTAGGCAGGATCGTTTCCGCCAAGCACTCCATGT 240
Query 257 GTTCGACGAAATTACCGTTAGAAATGCCTTCTCTTACAACGCACTTCTCATCGCGTATAC 316
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 GTTCGACGAAATTACCGTTAGAAATGCCTTCTCTTACAACGCACTTCTCATCGCTTATAC 300
Query 317 GTCGCGTGAAATGTATTTTGATGCTTTTTCTTTGTTTTTGTCCTGGATTGGGTCCTCTTG 376
|||||||| |||||||| |||||||| || ||||| |||||||||||||| ||||||||
Sbjct 301 TTCGCGTGAGATGTATTTCGATGCTTTCTCGTTGTTCTTGTCCTGGATTGGATCCTCTTG 360
Query 377 TTACTCTTCCGGTGCTGCCAGACCAGATTCTATTAGCATCTCTTGTGTGTTGAAGGCACT 436
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 TTACTCTTCCGATGCTGCCAGACCGGATTCTATTAGCATCTCTTGTGTGTTGAAGGCACT 420
Query 437 CTCAGGTTGTGATGATTTCTGGTTGGGTTCATTGGCTCGGCAAGTTCATGGGTTTGTTAT 496
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 421 GTCAGGCTGTGATGATTTCTGGTTGGGTTCATTGGCTCGACAAGTTCATGGGTTTGTTAT 480
Query 497 ACAAGGTGGGTTTGATTCTGATGTCTTCGTGGGCAAT-GGACTGATCACGTACTATACAA 555
|| |||||| |||||||| |||||||||||||||||| ||| |||| |||||||||||||
Sbjct 481 ACGAGGTGGATTTGATTCAGATGTCTTCGTGGGCAATGGGA-TGATAACGTACTATACAA 539
Query 556 AGTGTGATAACATCGAGTCTGCGAGGAAAGTGTTTGATGAAATGTCTGACAGAGATGTTG 615
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 540 AGTGTGATAACATCGAGTCTGCGAGGAAAGTGTTTGATGAAATGTCTGAGAGAGATGTTG 599
Query 616 TTTCGTGGAACTCTATGATTTCCGGGTATTCTCAAAGTGGGTCTTTTGAGGATTGTAAGA 675
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 600 TTTCGTGGAATTCTATGATTTCAGGGTATTCTCAAAGTGGGTCTTTTGAGGACTGTAAGA 659
Query 676 AGTTGTATAAAGCGATGTTAGGTTGCTCAGATTTTAAGCCTAACGAAGTCACTGTGATAA 735
|| |||||||||||||||||| |||||| |||||||||||||| | ||||||||||||||
Sbjct 660 AGATGTATAAAGCGATGTTAGCTTGCTCTGATTTTAAGCCTAATGGAGTCACTGTGATAA 719
Query 736 GCGTCTTGCAGGCCTGCGGACAGTCAAGCGATCTTGTTTTCGGGATGGAAGTTCACAAGC 795
||||||| ||||| ||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 720 GCGTCTTCCAGGCGTGCGGACAGTCAAGCGATCTTATTTTCGGGTTGGAAGTTCACAAGA 779
Query 796 AGATGATTGAGAATCATATTCAGATGGATTTATCCCTGTGTAACGCTGTGATTGGTTTTT 855
|||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 780 AGATGATTGAAAATCATATTCAGATGGATTTATCCTTGTGTAATGCTGTGATTGGTTTTT 839
Query 856 ATGCTAAATGTGGTAGCTTGGATTATGCAAGAGCTTTGTTTGATGAGATGAGTGAGAAAG 915
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 840 ATGCTAAATGTGGTAGCTTGGATTATGCAAGAGCATTGTTTGATGAGATGAGTGAGAAAG 899
Query 916 ATTCGGTTACATACGGAGCTATAATTTCTGGATATATGGCTCATGGTCTTGTCAAGGAAG 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 ATTCGGTTACATACGGAGCTATAATTTCTGGATATATGGCTCATGGTCTTGTCAAGGAAG 959
Query 976 CAATGGCTTTATTTAGTGAAATGGAAAGCATTGGTCTGAGTACGTGGAATGCTGTGATTT 1035
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 960 CAATGGCTTTGTTTAGTGAAATGGAAAGCATTGGTCTGAGTACGTGGAATGCTATGATTT 1019
Query 1036 CAGGTCTTATGCAGAATAACCATCATGAGGAGGTTATAAACTCATTTAGGGAGATGATAA 1095
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CGGGTCTTATGCAGAATAACCATCATGAGGAGGTTATAAACTCATTTAGGGAGATGATAA 1079
Query 1096 GATGTGGCTCTAGGCCAAACACGGTGACCCTTTCGAGCCTTCTTCCGTCGTTGACATATA 1155
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1080 GATGTGGCTCGAGGCCAAACACGGTGACCCTTTCGAGCCTTCTTCCTTCGTTGACATATA 1139
Query 1156 GTTCAAATCTGAAAGGGGGTAAGGAAATCCACGCTTTTGCCATCCGTAACGGCTCTGACA 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1140 GTTCAAATCTGAAAGGGGGTAAGGAAATCCACGCTTTTGCCATCCGTAACGGCGCTGACA 1199
Query 1216 ACAATATATATGTCACCACCTCCATTATAGATAACTATGCCAAATTAGGATTTCTGCTAG 1275
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1200 ACAATATATATGTCACCACTTCCATTATAGATAACTATGCTAAATTAGGATTTCTGCTAG 1259
Query 1276 GAGCTCAAAGGGTTTTTGATAACTGTAAAGACAGGAGCTTGATTGTTTGGACCGCAATTA 1335
|||||||||| |||||||||||||||||||| ||||||||||||| |||||| |||||||
Sbjct 1260 GAGCTCAAAGAGTTTTTGATAACTGTAAAGATAGGAGCTTGATTGCTTGGACGGCAATTA 1319
Query 1336 TAACGGCATATGCTGTTCATGGGGACTCTGATTCTGCTTGTAGTCTTTTTGACCAAATGC 1395
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TAACAGCATATGCTGTTCATGGGGACTCTGATTCTGCTTGTAGTCTTTTTGACCAAATGC 1379
Query 1396 AGTGTCTTGGAACTAAGCCAGACAATGTCACACTAACAGCTGTTCTTTCAGCTTTTGCGC 1455
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1380 AGTGTCTTGGAACTAAGCCAGACGATGTCACACTAACAGCTGTTCTTTCAGCTTTTGCGC 1439
Query 1456 ACTC-GGGAGATTTGGATAAGGCGCAACATATATTTGATTCTATGTTAACTAAGTATAAC 1514
|||| ||| |||| || | |||||| |||||||||||||||||||||||||||||| ||
Sbjct 1440 ACTCAGGG-GATTCAGACATGGCGCAGCATATATTTGATTCTATGTTAACTAAGTATGAC 1498
Query 1515 ATTGAGCCTGGAGTGGAGCACTATGCTTGTATGGTTAGTGTTCTTAGCCGGGCTGGAAAA 1574
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1499 ATTGAGCCTGGAGTTGAGCACTATGCTTGTATGGTAAGTGTTCTTAGCCGGGCTGGAAAA 1558
Query 1575 CTTTCGAATGCAATGGAATTCATTTCTAAGATGCCAATTGAACCAATTGCTAAAGTTTGG 1634
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1559 CTTTCGGATGCAATGGAATTCATTTCTAAGATGCCAATTGATCCAATTGCTAAAGTTTGG 1618
Query 1635 GGCGCATTGTTGAACGGGGCTTCTGTTCTCGGTGATGTGGAGATCGCTAGGTTCGCTTGT 1694
|| |||||||||||||| || |||||||| || ||| | ||||| |||||||||||||||
Sbjct 1619 GGTGCATTGTTGAACGGAGCCTCTGTTCTTGGCGATTTAGAGATTGCTAGGTTCGCTTGT 1678
Query 1695 GATCGCTTGTTCGAAATGGAGCCTGAAAATACAGGGAACTACACTATCATGGCGAATTTG 1754
||||| ||||| || ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1679 GATCGGTTGTTTGAGATGGAACCTGAAAACACAGGGAACTACACTATCATGGCGAATTTG 1738
Query 1755 TATACTCAAGCAGGGAGATGGGAAGAAGCTGAAGTTGTAAGGGATAAGATGAAAAGAATT 1814
|| |||||||||||||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct 1739 TACACTCAAGCAGGGAGATGGGAAGAAGCTGAAATGGTAAGGAATAAGATGAAAAGAATC 1798
Query 1815 GGATTGAAGAAAATCCCCGGGACCAGCTGGATCGAAACTGATAAAGGATTACGTAGTTTC 1874
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1799 GGATTGAAGAAAATCCCCGGCACCAGCTGGATCGAAACTGAGAAAGGATTACGTAGTTTC 1858
Query 1875 ATAGCGAAAGACAGTTCGTGTGAGAGAAGCAAAGAGATGTATGATATAATAGAGGGTTTG 1934
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1859 ATAGCGAAAGACAGTTCGTGTGAGAGAAGCAAAGAGATGTATGAGATAATAGAGGGTTTG 1918
Query 1935 GTTGAGTCAATGTGCGACAAAGAGTATATCATGAAACAAGAGCTTGATGAAGCTTA 1990
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1919 GTTGAGTCAATGAGCGACAAAGAGTATATCAGGAAACAAGAGCTTGATGAAGCTTA 1974
Score = 62.1 bits (33), Expect = 2e-08
Identities = 50/57 (88%), Gaps = 5/57 (9%)
Strand=Plus/Plus
Query 1992 GCATTTTCTTGCCATGGACTTCTCAAGGAGTTACTG-T--G--ATGATTTGTTTTTT 2043
||||| ||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 2001 GCATTGTCTTGCCATGGACTTCTCAAGGAGTTACTACTATGGGATGATTTGTTTTTT 2057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101605903080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5