BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934384
Length=862
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37330.1 | Symbols: ALS3 | aluminum sensitive 3 | chr2:15669... 1367 0.0
AT2G37340.1 | Symbols: RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 | argi... 80.5 2e-14
> AT2G37330.1 | Symbols: ALS3 | aluminum sensitive 3 | chr2:15669138-15670187
FORWARD LENGTH=889
Length=889
Score = 1367 bits (740), Expect = 0.0
Identities = 811/846 (96%), Gaps = 2/846 (0%)
Strand=Plus/Plus
Query 13 ACAGAGAGATGGATCTGTATTGGGAAGATTTTTTCAAGGATTACGAATGGCTGATCGTGT 72
||||||| ||||||||| | ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 45 ACAGAGACATGGATCTGAAATGGGATGATTTTTTCAACGATTACGAATGGCTGATCGTGT 104
Query 73 TTCTGAAAGGTATGGTGAAGCCTGCGGCGGCGCTCGTGGTGGTGCTTTTGGCGGTGGTTC 132
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 105 TTCTGAAAGGTATGGTGAAGCCAGCGGCGGCGCTCGTGGTGGTGCTTTTGGCGGTGATTC 164
Query 133 TTTCATACTCGCAGAACCTCTCTTTGGAAGGAGAAATGATATACTCTGTTTTCCGATCGT 192
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 165 TTTCATACTCGCAGAACCTATCTTTGGAAGGAGAAATGATATACTCTGTTTCCCGATCGT 224
Query 193 TTCTTCAGCTCTCTGTTATCGGATTTGTTCTTCAATTCATCTTTAACCAAGAGAACGCCG 252
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| | |
Sbjct 225 TTCTTCAACTCTCTGTTATCGGATTTGTTCTTCAGTTCATCTTTAACCAAGAGAACTCAG 284
Query 253 GCTGGATCGTCCTCGCTTATCTCTTCATGGTCTCTGTCGCCGGTTACACTGCCGGACAAC 312
|||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 GCTGGATCATCCTTGCGTATCTCTTCATGGTCTCTGTCGCCGGTTACACTGCCGGACAAC 344
Query 313 GTGCGAAGCACGTGCCACGAGGAAAGTACGTGGCCGGATTATCGATCCTTGCCGGGACTT 372
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 345 GTGCGAGGCACGTGCCACGTGGAAAGTACGTGGCCGGATTATCGATCCTTGCCGGGACTT 404
Query 373 CAATCACAATGATT-TTGCTCGTCGTCCTCAACGTTTTTCCTTTCACTCCGAGGTATATG 431
|||| |||||| || ||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 405 CAATTACAATG-TTCTTGCTCGTCCTCCTCAACGTCTTTCCTTTCACTCCGAGGTATATG 463
Query 432 ATCCCAATCGCCGGAATGTTGGTCGGAAACGCCATGACGGTCACCGGAGTTACCATGAAA 491
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 464 ATCCCAATCGCCGGAATGTTGGTCGGAAATGCCATGACCGTCACCGGAGTTACCATGAAA 523
Query 492 CAGCTTCGAGATGACATCAAAATGCAACTCAACCTGGTGGAGACGGCATTGGCACTAGGA 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 CAGCTTCGAGATGACATCAAAATGCAACTCAACCTGGTGGAGACGGCATTGGCACTAGGA 583
Query 552 GCAACGCCAAGACAAGCGACGTTGCAACAGGTGAAGAGAGCACTAGTGATCTCTCTATCT 611
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 584 GCAACGCCAAGACAAGCGACGTTGCAACAGGTGAAGAGAGCACTAGTGATCTCTCTGTCT 643
Query 612 CCGGTTTTGGATAGCTGCAAAACCGTTGGATTGATCTCTCTACCAGGCGCAATGACCGGT 671
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 644 CCGGTTTTAGATAGCTGCAAAACCGTTGGATTGATCTCTCTACCAGGCGCAATGACTGGT 703
Query 672 ATGATAATGGGCGGTGCGTCGCCTCTTGAAGCTATTCAGCTTCAGATCGTAGTCATGAAC 731
|||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 704 ATGATAATGGGCGGGGCGTCGCCTCTAGAAGCTATTCAGCTTCAGATAGTAGTCATGAAC 763
Query 732 ATGATGGTTGGAGCAGCAACAGTTAGTAGCATCACGTCTACGTATCTTTGTTGGCCATCT 791
|||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 764 ATGATGGTAGGAGCAGCTACGGTTAGTAGCATCACGTCTACTTATCTTTGTTGGCCATCT 823
Query 792 TTCTTCACTAAAGCTTACCAGTTACAAACTCATGTCTTCTCCTCAGATTGAAACTTTTAT 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 TTCTTCACTAAAGCTTACCAGTTACAAACTCATGTCTTCTCCTCAGATTGAAACTTTTAT 883
Query 852 AAATCC 857
||||||
Sbjct 884 AAATCC 889
> AT2G37340.1 | Symbols: RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 | arginine/serine-rich
zinc knuckle-containing protein 33 | chr2:15670147-15672700
REVERSE LENGTH=1180
Length=1180
Score = 80.5 bits (43), Expect = 2e-14
Identities = 43/43 (100%), Gaps = 0/43 (0%)
Strand=Plus/Minus
Query 817 AAACTCATGTCTTCTCCTCAGATTGAAACTTTTATAAATCCTT 859
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 AAACTCATGTCTTCTCCTCAGATTGAAACTTTTATAAATCCTT 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42045981039
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5