BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934391
Length=691
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43270.1 | Symbols: | F-box and associated interaction doma... 158 9e-38
> AT2G43270.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:17988207-17989491 REVERSE LENGTH=1164
Length=1164
Score = 158 bits (85), Expect = 9e-38
Identities = 376/510 (74%), Gaps = 46/510 (9%)
Strand=Plus/Plus
Query 74 CGGAATTCTAGCATTGGATCTTCACAAAGAAGAGTTCCATTATGTCTCTGTTCCGGATAA 133
|||||| ||||| ||||||||||||| | ||||||||| |||| || ||||| ||
Sbjct 591 CGGAATCCTAGCCTTGGATCTTCACACACTAGAGTTCCACAATGTTTCCGTTCCATCTAC 650
Query 134 GTGGGT-CAAGCA-AAGTACCCTGATAGCCAACCTTGATGACCGTCTAACCATAGCCAAT 191
|| | | | | || ||| ||| ||| | |||||||||||||||||| ||||| | ||
Sbjct 651 GT-GTTGC-ACCATGAGTGCCCAGATGGTGAACCTTGATGACCGTCTAGCCATAACTAA- 707
Query 192 ACGCCTACGTCTGTTTATTCTGACT-GGAGACTAGAGATA-TGTAG-C--ATGAATGCAC 246
| | ||| | | | || | |||| ||||||||| || || | ||| ||| |
Sbjct 708 A-ACAAACG---G-TGCGCCAGAATGGGAG-CTAGAGATACTG-AGCCTGATGGATGTAG 760
Query 247 ATGAAGAAATATGGAGCAAGACTTACTCCATAAGTCTAGATGGTCTTCTAGCTT-TTAAG 305
| |||||||||||||||||||||||||||||| | ||| || | | | || ||||
Sbjct 761 ACAAAGAAATATGGAGCAAGACTTACTCCATAACTTTAGCCAGTAT-C-A--TTATTAAC 816
Query 306 CTACCACGTTCAAGGTGGTGCATGT-GGTTCACGCCGCTGGCTGTTTCCAAGG-AGGGGG 363
| ||| | | || | | | || |||||||| | || | ||||| ||| ||||
Sbjct 817 C-ACC-CATGGGAG-TC-T--A-GTTGGTTCACGGTGTTGACGGTTTCTAAGCTAGGGA- 868
Query 364 ATCTTATCTTTTATAACAATTACCAAT-GGTTGTTCAAATAT--TGCCCAGAGACACGTG 420
||||| |||||| | ||||| || || ||||||| |||||| | || |||||| ||
Sbjct 869 ATCTTGTCTTTTGTGACAATCAC-AAGCGGTTGTTTAAATATAATACC--GAGACAAATG 925
Query 421 AGCTTCATTGTCTCTCCTCTGATATATGTGTTATATCTCCTTACCTCGAGAATTTGGTCC 480
|| || ||||||||||| ||||| | ||||||||||||||| |||||| ||||||| |
Sbjct 926 AGATTTGCTGTCTCTCCTCAGATATTTCTGTTATATCTCCTTATCTCGAGGATTTGGTAC 985
Query 481 CACTTCGGTCAGAGTCTGGACATCATCCAGATCCGGATGATAATAAAGTCAGGACATCTA 540
||||||| | || || |||||| ||| | || |||| | || || ||||||||||||
Sbjct 986 CACTTCGTTTGGACTCAGGACATGATC-A--TCGGGATTACAA-AA--TCAGGACATCTA 1039
Query 541 GCTGCGGATT-TTTTACCAAGCATCCGGAG 569
| |||||||| |||| | ||||||||||||
Sbjct 1040 GTTGCGGATTGTTTT-CGAAGCATCCGGAG 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33455941902
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5