BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg934405 Length=619 Score E Sequences producing significant alignments: (Bits) Value AT2G37478.1 | Symbols: CPuORF52 | conserved peptide upstream op... 920 0.0 AT2G37480.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 920 0.0 > AT2G37478.1 | Symbols: CPuORF52 | conserved peptide upstream open reading frame 52 | chr2:15737842-15739848 FORWARD LENGTH=1455 Length=1455 Score = 920 bits (498), Expect = 0.0 Identities = 588/629 (93%), Gaps = 16/629 (3%) Strand=Plus/Plus Query 1 CCTTCTGCTGTTACTTGGATATGAGCTCTGTTTGTGGTAAGTTGGATTTCCAAGATGCAG 60 |||| | |||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 582 CCTTGTACTGTTAGTTGGATATGAGCTCTGTTTGTGGTAAGTTGGATTTCAAAGATGCAG 641 Query 61 ACTTTGACA----T-C-TCGAGTCCCACGCAATGTTCTAAAGGCTCGAAGCATACCTCGT 114 ||||||||| | | ||||||||||| |||||||||||||||||| |||||||||||| Sbjct 642 ACTTTGACATCTCTACTTCGAGTCCCACACAATGTTCTAAAGGCTCGGAGCATACCTCGT 701 Query 115 TTACT-GCATCTGAAGATTCTCAGGAGTCTGATGGAGATGAAACTGGTTATATAGACCCA 173 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 702 TTACTGGC-TCTGAAGATTCTCAGGAGTCTGATGGAGATGAAACTGGTTATATAGACCCA 760 Query 174 ACTGCGAATGAAGAAACCGCTGATCAGGATTTCGGCAAATAC-ACTTTAAGTCCCAACTC 232 |||| |||||| |||||||||| ||||||||||||||||| | ||||||||| ||||| Sbjct 761 ACTGTGAATGATGAAACCGCTGTTCAGGATTTCGGCAAAT-CTGTTTTAAGTCCTAACTC 819 Query 233 TT-TGGATGATGAAGACAAGGATGAGAACCTTACGACTCAAACACCAATTGTTCTCATCC 291 || | |||||||||||||||||||||||||||| |||||| |||||||||||||| |||| Sbjct 820 TTCT-GATGATGAAGACAAGGATGAGAACCTTATGACTCAGACACCAATTGTTCTTATCC 878 Query 292 CAGCCATAAAAGGCAGCCGAGAGAAGCATGGCTTGTCACTGAGGAAGTCTAGTGTTTCAT 351 |||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||| Sbjct 879 CAGCCATAAAAGGCAGTCGAGAGAAGTATGGCTTGTCACTGAGGAAGTCGAGTGTTTCAT 938 Query 352 GGGCGGCTGATGTGTATGATCCTCCTCCCTCGATAGCCTCCCACACAGTCACAAGAAGCA 411 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 939 GGGGGGCTGATGTGTATGATCCTCCTCCCTCGATAGCCTCCCACACAGTCACAAGAAGCA 998 Query 412 AGAAACAGCAGCAGAAATCCAAGAGCAAAGACAACCACAGGAAGACTGGAAAGAAAGGAC 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 999 AGAAACAGCAGCAGAAATCCAAGAGCAAAGACAACCACAGGAAGACTGGAAAGAAAGGAC 1058 Query 472 AGAAGAGC-AAAGACAACTCTTCCTCACGTGGTGGCAGCAGCAAAGACAAGAAGCAAGCT 530 ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1059 AGAAGT-CTAAAGACAACTCTTCCTCACGTGGTGGCAGCAGCAAAGACAAGAAGCAAGCT 1117 Query 531 TCTCGCAAACACAGTCGAGACAAATTTGAATGGGTAACTCAGATGCCTATAGTTGCAGCT 590 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1118 TCTCGCAAACACAGTCGAGACAAATTTGATTGGGTAACTCAGATGCCTATAGTTGCAGCA 1177 Query 591 TCTTCTTAAATGGCATTGGCTGCTAGTAA 619 ||||| | |||| | ||||||||||||| Sbjct 1178 TCTTCATGAATG--AGTGGCTGCTAGTAA 1204 > AT2G37480.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53670.2); Has 186 Blast hits to 186 proteins in 35 species: Archae - 0; Bacteria - 2; Metazoa - 14; Fungi - 7; Plants - 154; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr2:15737842-15739848 FORWARD LENGTH=1455 Length=1455 Score = 920 bits (498), Expect = 0.0 Identities = 588/629 (93%), Gaps = 16/629 (3%) Strand=Plus/Plus Query 1 CCTTCTGCTGTTACTTGGATATGAGCTCTGTTTGTGGTAAGTTGGATTTCCAAGATGCAG 60 |||| | |||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 582 CCTTGTACTGTTAGTTGGATATGAGCTCTGTTTGTGGTAAGTTGGATTTCAAAGATGCAG 641 Query 61 ACTTTGACA----T-C-TCGAGTCCCACGCAATGTTCTAAAGGCTCGAAGCATACCTCGT 114 ||||||||| | | ||||||||||| |||||||||||||||||| |||||||||||| Sbjct 642 ACTTTGACATCTCTACTTCGAGTCCCACACAATGTTCTAAAGGCTCGGAGCATACCTCGT 701 Query 115 TTACT-GCATCTGAAGATTCTCAGGAGTCTGATGGAGATGAAACTGGTTATATAGACCCA 173 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 702 TTACTGGC-TCTGAAGATTCTCAGGAGTCTGATGGAGATGAAACTGGTTATATAGACCCA 760 Query 174 ACTGCGAATGAAGAAACCGCTGATCAGGATTTCGGCAAATAC-ACTTTAAGTCCCAACTC 232 |||| |||||| |||||||||| ||||||||||||||||| | ||||||||| ||||| Sbjct 761 ACTGTGAATGATGAAACCGCTGTTCAGGATTTCGGCAAAT-CTGTTTTAAGTCCTAACTC 819 Query 233 TT-TGGATGATGAAGACAAGGATGAGAACCTTACGACTCAAACACCAATTGTTCTCATCC 291 || | |||||||||||||||||||||||||||| |||||| |||||||||||||| |||| Sbjct 820 TTCT-GATGATGAAGACAAGGATGAGAACCTTATGACTCAGACACCAATTGTTCTTATCC 878 Query 292 CAGCCATAAAAGGCAGCCGAGAGAAGCATGGCTTGTCACTGAGGAAGTCTAGTGTTTCAT 351 |||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||| Sbjct 879 CAGCCATAAAAGGCAGTCGAGAGAAGTATGGCTTGTCACTGAGGAAGTCGAGTGTTTCAT 938 Query 352 GGGCGGCTGATGTGTATGATCCTCCTCCCTCGATAGCCTCCCACACAGTCACAAGAAGCA 411 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 939 GGGGGGCTGATGTGTATGATCCTCCTCCCTCGATAGCCTCCCACACAGTCACAAGAAGCA 998 Query 412 AGAAACAGCAGCAGAAATCCAAGAGCAAAGACAACCACAGGAAGACTGGAAAGAAAGGAC 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 999 AGAAACAGCAGCAGAAATCCAAGAGCAAAGACAACCACAGGAAGACTGGAAAGAAAGGAC 1058 Query 472 AGAAGAGC-AAAGACAACTCTTCCTCACGTGGTGGCAGCAGCAAAGACAAGAAGCAAGCT 530 ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1059 AGAAGT-CTAAAGACAACTCTTCCTCACGTGGTGGCAGCAGCAAAGACAAGAAGCAAGCT 1117 Query 531 TCTCGCAAACACAGTCGAGACAAATTTGAATGGGTAACTCAGATGCCTATAGTTGCAGCT 590 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1118 TCTCGCAAACACAGTCGAGACAAATTTGATTGGGTAACTCAGATGCCTATAGTTGCAGCA 1177 Query 591 TCTTCTTAAATGGCATTGGCTGCTAGTAA 619 ||||| | |||| | ||||||||||||| Sbjct 1178 TCTTCATGAATG--AGTGGCTGCTAGTAA 1204 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29839083318 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5