BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934405
Length=619
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37478.1 | Symbols: CPuORF52 | conserved peptide upstream op... 920 0.0
AT2G37480.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 920 0.0
> AT2G37478.1 | Symbols: CPuORF52 | conserved peptide upstream
open reading frame 52 | chr2:15737842-15739848 FORWARD LENGTH=1455
Length=1455
Score = 920 bits (498), Expect = 0.0
Identities = 588/629 (93%), Gaps = 16/629 (3%)
Strand=Plus/Plus
Query 1 CCTTCTGCTGTTACTTGGATATGAGCTCTGTTTGTGGTAAGTTGGATTTCCAAGATGCAG 60
|||| | |||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 582 CCTTGTACTGTTAGTTGGATATGAGCTCTGTTTGTGGTAAGTTGGATTTCAAAGATGCAG 641
Query 61 ACTTTGACA----T-C-TCGAGTCCCACGCAATGTTCTAAAGGCTCGAAGCATACCTCGT 114
||||||||| | | ||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 642 ACTTTGACATCTCTACTTCGAGTCCCACACAATGTTCTAAAGGCTCGGAGCATACCTCGT 701
Query 115 TTACT-GCATCTGAAGATTCTCAGGAGTCTGATGGAGATGAAACTGGTTATATAGACCCA 173
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 TTACTGGC-TCTGAAGATTCTCAGGAGTCTGATGGAGATGAAACTGGTTATATAGACCCA 760
Query 174 ACTGCGAATGAAGAAACCGCTGATCAGGATTTCGGCAAATAC-ACTTTAAGTCCCAACTC 232
|||| |||||| |||||||||| ||||||||||||||||| | ||||||||| |||||
Sbjct 761 ACTGTGAATGATGAAACCGCTGTTCAGGATTTCGGCAAAT-CTGTTTTAAGTCCTAACTC 819
Query 233 TT-TGGATGATGAAGACAAGGATGAGAACCTTACGACTCAAACACCAATTGTTCTCATCC 291
|| | |||||||||||||||||||||||||||| |||||| |||||||||||||| ||||
Sbjct 820 TTCT-GATGATGAAGACAAGGATGAGAACCTTATGACTCAGACACCAATTGTTCTTATCC 878
Query 292 CAGCCATAAAAGGCAGCCGAGAGAAGCATGGCTTGTCACTGAGGAAGTCTAGTGTTTCAT 351
|||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 879 CAGCCATAAAAGGCAGTCGAGAGAAGTATGGCTTGTCACTGAGGAAGTCGAGTGTTTCAT 938
Query 352 GGGCGGCTGATGTGTATGATCCTCCTCCCTCGATAGCCTCCCACACAGTCACAAGAAGCA 411
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 GGGGGGCTGATGTGTATGATCCTCCTCCCTCGATAGCCTCCCACACAGTCACAAGAAGCA 998
Query 412 AGAAACAGCAGCAGAAATCCAAGAGCAAAGACAACCACAGGAAGACTGGAAAGAAAGGAC 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 AGAAACAGCAGCAGAAATCCAAGAGCAAAGACAACCACAGGAAGACTGGAAAGAAAGGAC 1058
Query 472 AGAAGAGC-AAAGACAACTCTTCCTCACGTGGTGGCAGCAGCAAAGACAAGAAGCAAGCT 530
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 AGAAGT-CTAAAGACAACTCTTCCTCACGTGGTGGCAGCAGCAAAGACAAGAAGCAAGCT 1117
Query 531 TCTCGCAAACACAGTCGAGACAAATTTGAATGGGTAACTCAGATGCCTATAGTTGCAGCT 590
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1118 TCTCGCAAACACAGTCGAGACAAATTTGATTGGGTAACTCAGATGCCTATAGTTGCAGCA 1177
Query 591 TCTTCTTAAATGGCATTGGCTGCTAGTAA 619
||||| | |||| | |||||||||||||
Sbjct 1178 TCTTCATGAATG--AGTGGCTGCTAGTAA 1204
> AT2G37480.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G53670.2);
Has 186 Blast hits to 186 proteins in 35 species: Archae -
0; Bacteria - 2; Metazoa - 14; Fungi - 7; Plants - 154; Viruses
- 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr2:15737842-15739848
FORWARD LENGTH=1455
Length=1455
Score = 920 bits (498), Expect = 0.0
Identities = 588/629 (93%), Gaps = 16/629 (3%)
Strand=Plus/Plus
Query 1 CCTTCTGCTGTTACTTGGATATGAGCTCTGTTTGTGGTAAGTTGGATTTCCAAGATGCAG 60
|||| | |||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 582 CCTTGTACTGTTAGTTGGATATGAGCTCTGTTTGTGGTAAGTTGGATTTCAAAGATGCAG 641
Query 61 ACTTTGACA----T-C-TCGAGTCCCACGCAATGTTCTAAAGGCTCGAAGCATACCTCGT 114
||||||||| | | ||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 642 ACTTTGACATCTCTACTTCGAGTCCCACACAATGTTCTAAAGGCTCGGAGCATACCTCGT 701
Query 115 TTACT-GCATCTGAAGATTCTCAGGAGTCTGATGGAGATGAAACTGGTTATATAGACCCA 173
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 TTACTGGC-TCTGAAGATTCTCAGGAGTCTGATGGAGATGAAACTGGTTATATAGACCCA 760
Query 174 ACTGCGAATGAAGAAACCGCTGATCAGGATTTCGGCAAATAC-ACTTTAAGTCCCAACTC 232
|||| |||||| |||||||||| ||||||||||||||||| | ||||||||| |||||
Sbjct 761 ACTGTGAATGATGAAACCGCTGTTCAGGATTTCGGCAAAT-CTGTTTTAAGTCCTAACTC 819
Query 233 TT-TGGATGATGAAGACAAGGATGAGAACCTTACGACTCAAACACCAATTGTTCTCATCC 291
|| | |||||||||||||||||||||||||||| |||||| |||||||||||||| ||||
Sbjct 820 TTCT-GATGATGAAGACAAGGATGAGAACCTTATGACTCAGACACCAATTGTTCTTATCC 878
Query 292 CAGCCATAAAAGGCAGCCGAGAGAAGCATGGCTTGTCACTGAGGAAGTCTAGTGTTTCAT 351
|||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 879 CAGCCATAAAAGGCAGTCGAGAGAAGTATGGCTTGTCACTGAGGAAGTCGAGTGTTTCAT 938
Query 352 GGGCGGCTGATGTGTATGATCCTCCTCCCTCGATAGCCTCCCACACAGTCACAAGAAGCA 411
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 GGGGGGCTGATGTGTATGATCCTCCTCCCTCGATAGCCTCCCACACAGTCACAAGAAGCA 998
Query 412 AGAAACAGCAGCAGAAATCCAAGAGCAAAGACAACCACAGGAAGACTGGAAAGAAAGGAC 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 AGAAACAGCAGCAGAAATCCAAGAGCAAAGACAACCACAGGAAGACTGGAAAGAAAGGAC 1058
Query 472 AGAAGAGC-AAAGACAACTCTTCCTCACGTGGTGGCAGCAGCAAAGACAAGAAGCAAGCT 530
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 AGAAGT-CTAAAGACAACTCTTCCTCACGTGGTGGCAGCAGCAAAGACAAGAAGCAAGCT 1117
Query 531 TCTCGCAAACACAGTCGAGACAAATTTGAATGGGTAACTCAGATGCCTATAGTTGCAGCT 590
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1118 TCTCGCAAACACAGTCGAGACAAATTTGATTGGGTAACTCAGATGCCTATAGTTGCAGCA 1177
Query 591 TCTTCTTAAATGGCATTGGCTGCTAGTAA 619
||||| | |||| | |||||||||||||
Sbjct 1178 TCTTCATGAATG--AGTGGCTGCTAGTAA 1204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29839083318
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5