BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934407

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G37510.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   702    0.0  


> AT2G37510.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr2:15742992-15744541 REVERSE LENGTH=586
Length=586

 Score =  702 bits (380),  Expect = 0.0
 Identities = 442/472 (94%), Gaps = 3/472 (1%)
 Strand=Plus/Plus

Query  1    TCC-TTTGTCCCACTTGCTACAATGGCGTTCGCTTCCAGCTTTCGCCGTCTCGTTGCTGG  59
            ||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct  16   TCCTTTTGTCCCACTTGCTATAATGGCGTTCGTTTCCAGCTTTCGCCGTCTCGTTGCCGG  75

Query  60   ATCCAACAGCCTCTTGTCTTCTCCATCCTTCTGTGTTCGCCGCTGCTCAACTCTTACGTC  119
            |||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  76   ATCCAGTAGCCTCTTGTCTTCTCCATCCTTGTGTGTTCGCCGCTGCTCAACTCTTACGTC  135

Query  120  TCCCAGGCTCTTCGTTAGCGGTCTCTCCAGACTCACAACAAATGAAAAGCTTCAGGATGC  179
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  136  TCCCCGGCTCTTCGTTAGCGGTCTCTCCAGACTCACAACAAATGAAAAGCTTCAGGATGC  195

Query  180  ATTTGCTTCTTTTGGACAGCTCGTGGATGCGAGAGTGATCACAGACAGAGAGACCGGGAG  239
            |||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||
Sbjct  196  ATTTGCTTCTTTTGGACAGCTCGTCGATGCGAGAGTGATCACAGACAGAGATTCCGGGAG  255

Query  240  ATCAAAGGGCTTCGGTTTTGTAACATATGCAACAATAGAAGATGCAGAGAAGGCCAAAGC  299
            ||||||||| || |||||||| |||||||||||||| |||||||||||||| ||||| ||
Sbjct  256  ATCAAAGGGTTTTGGTTTTGTGACATATGCAACAATTGAAGATGCAGAGAAAGCCAAGGC  315

Query  300  AGAGATGAATGCAAAGTTCTTGGATGGTTGGGTGATTTTTGTGGATCCTGCAAGACCTAG  359
            |||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct  316  AGAGATGAATGCAAAGTTCTTGGACGGTTGGGTAATTTTTGTTGATCCTGCAAGACCTAG  375

Query  360  AGAACCAAGACGGCCTCTGCAA-AGGGAGCCGCCTCGGTCTTCCTCTGGATCTGGTTTCA  418
            |||||||||||||||||||||| ||| | |||| |||| ||||||| | |||||||||||
Sbjct  376  AGAACCAAGACGGCCTCTGCAACAGGAA-CCGCTTCGGCCTTCCTCCGAATCTGGTTTCA  434

Query  419  CAACCAACAAAACCATCGGCTGGTGTGAATGAACAAAATCCAACCACTTATG  470
            ||||||||||||||||||| |||||| ||||||||||||||||| |||||||
Sbjct  435  CAACCAACAAAACCATCGGATGGTGTAAATGAACAAAATCCAACTACTTATG  486



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22354195415


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5