BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934409

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G37530.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   512    9e-145


> AT2G37530.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G07795.1); 
Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:15750970-15751672 
FORWARD LENGTH=703
Length=703

 Score =  512 bits (277),  Expect = 9e-145
 Identities = 366/408 (90%), Gaps = 10/408 (2%)
 Strand=Plus/Plus

Query  1    CTTTTAAAAACTTTAAACCAATGATTCGCCATCTAG-TCTCATCTCTGACCCACCGCTTC  59
            ||||||| ||||| |||||||||||||||||| | | |||| |||||||| ||| | |||
Sbjct  71   CTTTTAAGAACTTAAAACCAATGATTCGCCATAT-GTTCTCCTCTCTGACTCACAGATTC  129

Query  60   GCATGGCGGATTCCGA-TTTTCGTCTACGGCGCAACGTGGACGTTGTTTCTGACGATGAC  118
            |||||||||||||| |   |||||||||||||||||||||||||||||||||||| | ||
Sbjct  130  GCATGGCGGATTCC-ACACTTCGTCTACGGCGCAACGTGGACGTTGTTTCTGACGTTAAC  188

Query  119  GGTGGCGATCATCTCTCTCGCACCGGAATTCGCTTTCGTGTCGGCTATTTTCCCGTCATC  178
            |||||| |||||||| || |||||||||||||||||||||||||| |||||||||   ||
Sbjct  189  GGTGGCTATCATCTCGCTTGCACCGGAATTCGCTTTCGTGTCGGCGATTTTCCCG---TC  245

Query  179  TTCTTCTTCGGTGGAGTTCTCTCGGCGGTGCGGCTCTTACGCAGCCGTTTTGGTGCCGTT  238
            |||||| |  | || |||||| ||||||||||| ||||| |||||| | ||||| ||| |
Sbjct  246  TTCTTC-T--GAGGTGTTCTCGCGGCGGTGCGGTTCTTATGCAGCCATATTGGTTCCGCT  302

Query  239  GGATCTTCCTTCGGAGGTGTTGTGTTTACCGGCGAATCTTTTCCGGAGGTCGAAGATGGA  298
            ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  303  GGATCTTCCCTCGGAGGTCTTGTGTTTACCGGCGAATCTTTTCCGGAGGTCGAAGATGGA  362

Query  299  CCTCGTTGTGCCACCGGTTTTTGCAGCAATTGTTGTGGCTCTTTCCGCCGTCGTCGTCCG  358
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct  363  CCTCGTTGTGCCGCCGGTTTTTGCAGCAATTGTTGTGGCTCTTTCCGCCGTCGTCGTAAG  422

Query  359  AACTATGGGCCTTTGGGAGGCTGAAGAAGCCCATTAATTTAGGCCCAT  406
             |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct  423  GACTATGGGCCTTTGGGAGGCCGACGAAGCCCATTAATTTAGGCCCAT  470



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19855760855


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5