BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934416
Length=1022
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37590.1 | Symbols: ATDOF2.4, DOF2.4 | DNA binding with one ... 1561 0.0
> AT2G37590.1 | Symbols: ATDOF2.4, DOF2.4 | DNA binding with one
finger 2.4 | chr2:15769121-15770619 FORWARD LENGTH=1286
Length=1286
Score = 1561 bits (845), Expect = 0.0
Identities = 974/1035 (94%), Gaps = 14/1035 (1%)
Strand=Plus/Plus
Query 1 TAAAATCAAAAGAGAATAACCATGGTTTTCTCCTCCATCCAAGCTTATCTTGATTCATCT 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 151 TAAAATCAAAAGAGAATAACCATGGTTTTCTCCTCCATCCAAGCCTATCTTGATTCATCC 210
Query 61 AACTGGCAACAGGCTCCTCCAAGCAATTATAATCAGGACGGCGTAGGAGCCCCAG-AAAC 119
|||||||||||||||||||| |||||||||||||| ||||| ||| ||| ||| |||
Sbjct 211 AACTGGCAACAGGCTCCTCCGAGCAATTATAATCATGACGGAACAGGCGCCTCAGCAAA- 269
Query 120 CGGAGGCCATGTTCTTCGTCCTCAGCT---G---CAGC--CA--CA-A-CAGCAGCCGAA 167
||||| |||||||||||||||||||| | |||| || || | ||||||||| |
Sbjct 270 TGGAGGTCATGTTCTTCGTCCTCAGCTGCAGCCACAGCAGCAGCCACAGCAGCAGCCGCA 329
Query 168 TCCTAATGGGAGCGTAGGTGGAGGTGGAAGCGGCGGTGGCTCGATCCGAGCAGGATCAAT 227
|||||||||||||| || ||||||||| | || || |||||||||||||||||||||||
Sbjct 330 TCCTAATGGGAGCGGGGGCGGAGGTGGAGGTGGAGGCGGCTCGATCCGAGCAGGATCAAT 389
Query 228 GGTGGACAGAGCAAGACAAGCAAACGTAGCCTTGCCTGAAGCAGCACTGAAATGTCCAAG 287
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 390 GGTGGACAGAGCAAGACAAGCAAACGTAGCCTTGCCAGAAGCAGCACTGAAATGTCCGAG 449
Query 288 ATGCGAATCCACCAACACCAAGTTCTGCTACTTCAACAACTACAGCCTCACTCAGCCACG 347
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 450 ATGCGAATCCACCAACACCAAGTTCTGCTACTTCAACAACTACAGCCTCACTCAACCACG 509
Query 348 CCACTTCTGCAAGACCTGCCGGAGATACTGGACACGTGGCGGTGCCCTCCGCAACGTCCC 407
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 510 CCACTTCTGCAAGACCTGCCGGAGATACTGGACACGTGGCGGAGCTCTCCGCAACGTCCC 569
Query 408 AGTCGGCGGTGGCTGCCGGAGAAACAGGCGTACTAAAAGCAGCAGCAACAACAACAATAA 467
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 570 AGTCGGCGGTGGCTGCCGGAGAAACAGGCGTACCAAAAGCAACAGCAACAACAACAATAA 629
Query 468 CAGCACTGCTACTAGCAACAACACCAGCTTCTCCTCCGGGAATGCATCCACCATCAGCTC 527
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
Sbjct 630 CAGCACTGCTACTAGCAATAACACCAGTTTCTCCTCCGGGAATGCATCCACCATCAGCAC 689
Query 528 GATTCTCTCCTCCCACTACGGAGGAAACCAAGAGAGTATCTTAAGCCAGATTTTGTCTCC 587
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 690 GATTCTCTCCTCCCACTATGGAGGAAACCAAGAGAGTATCTTAAGCCAGATTTTGTCTCC 749
Query 588 AGCGAGGCTAATGAATCCTACTTATAATCATCTCGGAGATCTCACAAATAATACAAAAAC 647
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 750 GGCGAGGCTAATGAATCCTACTTACAATCATCTCGGAGATCTCACAAGTAATACAAAAAC 809
Query 648 AGACAACAACATGAGTTTGTTGAACTATGGAGGATTGAGTCAAGACTTGAGGTCAATCCA 707
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 AGACAACAACATGAGCTTGTTGAACTATGGAGGATTGAGTCAAGACTTGAGGTCAATCCA 869
Query 708 CATGGGAGCTTCTGGTGGCTCGCTTATGAGCTGTGTTGATGAATGGAGATCAGCATCTCA 767
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 870 CATGGGAGCTTCTGGTGGCTCGCTTATGAGCTGTGTTGATGAATGGAGATCGGCGTCTTA 929
Query 768 TCATCAGCAGCCGAGTTTGGGCGGTGGAAACTTGGAGGATTCTTCTAATCCTAATCCATC 827
|||||||||| | ||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 930 TCATCAGCAGTCAAGTATGGGCGGTGGGAACTTGGAGGATTCTTCTAATCCTAATCCATC 989
Query 828 CTCAAATGGGTTTTACCCTTTTGAGTCGCCGAGGATAACTTCAACTTCAATCTCTTCTGC 887
| |||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||
Sbjct 990 CGCAAATGGGTTTTACTCTTTTGAGTCGCCGAGGATAACTTCAGCGTCAATCTCTTCTGC 1049
Query 888 TTTGGCATCGCAGTTTTCTTCGGTTAAAGTTGAAGATAATCCTTACAAATGGGTTAATGT 947
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 TTTAGCATCGCAGTTTTCTTCGGTTAAAGTTGAAGATAATCCTTACAAATGGGTTAATGT 1109
Query 948 CAATGGTAATTGCTCTTCCTGGACTGATCTTTCTGCTTTCGGCTCTTCTCGTTGAGTTCA 1007
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1110 CAATGGTAATTGCTCTTCCTGGAATGATCTTTCTGCTTTCGGCTCTTCTCGTTGAGTTCA 1169
Query 1008 ACCACACAACAAAAA 1022
|||||||||||||||
Sbjct 1170 ACCACACAACAAAAA 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50083444559
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5