BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934420
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37630.1 | Symbols: ATPHAN, AS1, ATMYB91, MYB91 | myb-like H... 2074 0.0
> AT2G37630.1 | Symbols: ATPHAN, AS1, ATMYB91, MYB91 | myb-like
HTH transcriptional regulator family protein | chr2:15781615-15783433
REVERSE LENGTH=1490
Length=1490
Score = 2074 bits (1123), Expect = 0.0
Identities = 1214/1258 (97%), Gaps = 5/1258 (0%)
Strand=Plus/Plus
Query 1 AAAGTGATAGAGAGAGCAAATCTGTGTGATGGAAGTTGCTCTTGAGTTTGGGATTA-TTA 59
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 76 AAAGTGAGAGAGAGAGCAAATCTGTGTGATGGAAGTTGCTCTTGAGTTTGGGATTATTTA 135
Query 60 TCCTTTTCAATATCATTTGATGAAGAAGGATGGTGAGTTGGGAAGAAGTGATGTCAGGAG 119
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 136 T-CTTTTCAATATCATTTGATGAAGAAGGATGGTGAGATGGGAAGAAGTGATGTCAGGAG 194
Query 120 GAGCAGGAGATGAAAGAGAGACAACGTTGGAGTGGTGAAGAAGATGCATTGTTACGTGCG 179
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 GAGTAGGAGATGAAAGAGAGACAACGTTGGAGTGGTGAAGAAGATGCATTGTTACGTGCT 254
Query 180 TACGTTAGACAGTTCGGTCCGAGAGAATGGCATCTTGTATCTGAGCGTATGAACAAACCT 239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 255 TACGTTAGACAGTTCGGTCCGAGAGAATGGCATCTTGTGTCTGAGCGTATGAACAAACCT 314
Query 240 TTGAACCGTGACGCCAAGTCTTGTTTAGAGAGATGGAAGAATTATCTTAAACCAGGGATC 299
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 315 TTGAACCGTGACGCCAAGTCTTGTTTAGAGAGATGGAAGAATTATCTTAAGCCAGGGATC 374
Query 300 AAGAAAGGTTCTTTGACTGAGGAAGAGCAGAGGCTTGTGATCCGTCTTCAGGAGAAACAC 359
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 AAGAAAGGGTCTTTGACAGAGGAAGAGCAGAGGCTTGTGATCCGTCTTCAGGAGAAACAC 434
Query 360 GGCAACAAGTGGAAGAAGATTGCTGCTGAGGTTCCCGGGAGGACGGCCAAGCGGTTAGGG 419
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 435 GGCAACAAGTGGAAGAAGATTGCTGCTGAGGTTCCCGGGAGGACGGCAAAGCGGTTAGGG 494
Query 420 AAGTGGTGGGAAGTGTTTAAGgagaagcaacagagagaagagaaagagagtaacaagaga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 AAGTGGTGGGAAGTGTTTAAGGAGAAGCAACAGAGAGAAGAGAAAGAGAGTAACAAGAGA 554
Query 480 gTTGAGCCTATTGACGAGAGTAAGTACGATCGGATTCTCGAGAGTTTTGCTGAGAAGCTT 539
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 555 GTTGAGCCTATTGACGAGAGTAAGTACGATCGGATTCTCGAGAGTTTCGCTGAGAAGCTT 614
Query 540 GTCAAAGAGCGGTCTAACGTTGTTCCTGCTGCTGCTGCCACTGCTGCCACGGTTGTGATG 599
||||||||||||||||||||||| || ||||||||||| ||||||| ||||||||||||
Sbjct 615 GTCAAAGAGCGGTCTAACGTTGT-CC--CTGCTGCTGCCGCTGCTGCAACGGTTGTGATG 671
Query 600 GCTAATTCGAATGGAGGGTTTTTACATTCTGAACAGCAAGTTCAGCCTCCTAACCCGGTG 659
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 672 GCTAATTCGAATGGAGGGTTTTTACATTCTGAACAACAAGTTCAGCCTCCTAACCCAGTG 731
Query 660 ATCCCGCCTTGGTTAGCTACTTCTAATAATGGGAACAATGTTGTTGCCAGGCCTCCCTCG 719
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 732 ATCCCGCCTTGGTTAGCTACTTCTAACAATGGGAACAATGTTGTTGCAAGGCCTCCCTCG 791
Query 720 GTGACTTTAACATTATCGCCCTCCACCGTGGCTGCAGCTGCGCCTCAACCGCCAATCCCG 779
|| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 792 GTAACTTTGACATTATCGCCTTCCACAGTGGCTGCAGCTGCGCCTCAACCGCCAATCCCG 851
Query 780 TGGCTGCAGCAGCAACAGCCCGAGAGAGCAGAGAGCGGTCCTGGGGGACTTGTGTTAGGG 839
|||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||
Sbjct 852 TGGCTGCAGCAGCAACAGCCTGAGAGAGCAGAGAACGGTCCAGGGGGACTTGTGTTAGGG 911
Query 840 AGTATGATGCCGTCTTGTAGTGGGAGTAGCGAGAGTGTGTTCTTGTCAGAACTAGTGGAA 899
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 912 AGTATGATGCCGTCTTGTAGTGGGAGTAGCGAGAGTGTGTTCTTGTCAGAGCTTGTGGAG 971
Query 900 TGTTGTAGAGAGTTGGAGGAAGGGCATAGAGCTTGGGCGGACCATAAGAAAGAGGCTGCA 959
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 972 TGTTGTAGAGAGTTGGAGGAAGGGCACCGAGCTTGGGCAGACCATAAGAAAGAGGCTGCA 1031
Query 960 TGGAGGTTAAGGAGGCTGGAGCTGCAGCTAGAGTCAGAGAAGACGTGTAGACAAAGGGAG 1019
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 TGGAGGCTAAGAAGGCTGGAGCTGCAGCTAGAGTCAGAGAAGACGTGTAGACAAAGGGAG 1091
Query 1020 AAGATGGAGGAGATTGAGGCAAAGATGAAAGCTCTTAGGGAAGAGCAAAAGACCGCAATG 1079
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1092 AAGATGGAGGAGATTGAGGCAAAGATGAAAGCTCTTAGGGAAGAGCAGAAGAACGCAATG 1151
Query 1080 GAGAAAATCGAAGGAGAGTACAGAGAACAGCTCGTTGGTTTGAGGCGAGACGCTGAGGCC 1139
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1152 GAGAAGATCGAAGGAGAGTACAGAGAACAGCTCGTTGGTTTGAGGCGAGACGCAGAGGCC 1211
Query 1140 AAAGACCAGAAACTGGCTGATCAATGGACCTCTAAGCATATCAGACTCACCAAGTTTCTT 1199
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1212 AAAGACCAGAAACTGGCTGATCAATGGACCTCTAGGCATATCAGACTCACCAAGTTTCTT 1271
Query 1200 GAACAACACATGGGTTGCAGATTAGACCGCCCCTAAACCGTCTCCTAAGCTCTTTGTT 1257
|||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1272 GAACAACAAATGGGTTGCAGATTAGACCGCCCCTGAACCGTCTCCTAAACTCTTTGTT 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61796870895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5