BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934422
Length=829
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37640.1 | Symbols: ATEXPA3, ATEXP3, ATHEXP ALPHA 1.9, EXP3 ... 1314 0.0
AT2G03090.1 | Symbols: ATEXPA15, EXP15, ATEXP15, ATHEXP ALPHA 1... 167 2e-40
> AT2G37640.1 | Symbols: ATEXPA3, ATEXP3, ATHEXP ALPHA 1.9, EXP3
| Barwin-like endoglucanases superfamily protein | chr2:15787705-15789853
REVERSE LENGTH=1202
Length=1202
Score = 1314 bits (711), Expect = 0.0
Identities = 793/832 (95%), Gaps = 8/832 (1%)
Strand=Plus/Plus
Query 2 tctctctctctc-t-TTCA-T-AATGACGGCGACTGCGTTT-GGGATCGGCTTGTGGTTG 56
|||||||||||| | || | | ||||||||||||||||||| ||| ||||||||||||||
Sbjct 19 TCTCTCTCTCTCTTATTAACTCAATGACGGCGACTGCGTTTAGGG-TCGGCTTGTGGTTG 77
Query 57 GCCGTTACGGCTTCCTTTCTCTTCACCGCTTCAAACGCCAAAATCCCCGGCGTTTACAGC 116
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 78 GCCGTTACGGCTTCCTTTCTCTTAACCGCAACAAACGCCAAAATCCCCGGCGTTTACAGT 137
Query 117 GGCGGCCCGTGGCAGAACGCACACGCCACTTTCTACGGTGGTAGTGACGCCTCCGGCACA 176
||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 138 GGCGGACCGTGGCAGAATGCACACGCCACTTTCTACGGTGGCAGTGACGCCTCCGGCACA 197
Query 177 ATGGGCGGCGCGTGTGGGTACGGGAACTTGTACAGCCAAGGATACGGTGTGAACACGGCG 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 ATGGGCGGCGCGTGTGGGTACGGGAACTTGTACAGCCAAGGATACGGTGTGAACACGGCG 257
Query 237 GCGTTGAGCACTGCTCTGTTCAACAACGGATTCAGCTGCGGTGCTTGTTTTGAGATTAAG 296
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 258 GCGTTGAGCACTGCTTTGTTCAACAACGGATTCAGCTGTGGTGCTTGTTTTGAGATTAAG 317
Query 297 TGTACTGATGACCCGAGATGGTGTGTTCCGGGAAATCCGTCTATTCTTGTGACGGCGACA 356
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 318 TGTACTGATGATCCGAGATGGTGTGTTCCGGGAAATCCATCTATTCTTGTGACGGCGACG 377
Query 357 AACTTTTGTCCACCGAATTTCGCTCAGCCGAGTGACGACGGAGGATGGTGTAATCCGCCG 416
||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 378 AACTTTTGTCCGCCGAATTTTGCTCAGCCGAGTGACGACGGAGGGTGGTGCAATCCGCCG 437
Query 417 CGAGAGCATTTTGATCTCGCCATGCCTATGTTCCTCAAGATCGGTTTGTACCGTGCCGGC 476
|| |||||||||||||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 438 CGCGAGCATTTTGATCTCGCCATGCCTATGTTCCTCAAGATCGGTCTATACCGTGCAGGC 497
Query 477 ATTGTCCCCGTCTCCTATCGCAGGGTACCTTGTCGGAAGATAGGAGGGATAAGATTCACA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 ATTGTCCCCGTCTCCTATCGCAGGGTACCTTGTCGGAAGATAGGAGGGATAAGATTCACA 557
Query 537 GTAAACGGATTCAGATACTTCAATCTTGTTCTGGTAACTAACGTTGCCGGCGCCGGAGAT 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 GTAAACGGATTCAGATACTTCAATCTTGTTCTGGTAACTAACGTTGCCGGCGCCGGAGAT 617
Query 597 ATTAACGGAGTTAGCGTAAAGGGATCAAAGACAGATTGGGTGAGGATGAGTAGGAACTGG 656
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 618 ATTAACGGAGTTAGCGTAAAGGGATCAAAGACAGATTGGGTGAGGATGAGTCGGAACTGG 677
Query 657 GGACAGAACTGGCAGTCCAACGCCGTCCTCATCGGCCAATCACTCTCTTTCCGAGTCACC 716
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 678 GGACAGAACTGGCAATCCAACGCCGTTCTCATCGGCCAATCACTCTCTTTCCGAGTCACC 737
Query 717 GCCTCTGATCGACGTTCCTCCACCTCATGGAACGTTGCTCCTTCCACGTGGCAGTTTGGT 776
|||||||| |||||||| || ||||||||||||||||||||| |||||||||||||||||
Sbjct 738 GCCTCTGACCGACGTTCTTCTACCTCATGGAACGTTGCTCCTGCCACGTGGCAGTTTGGT 797
Query 777 CAGACTTTCTCCGGCAAAAACTTCCGAGTCTGAAGTCCGAAAA-C-ACCCAA 826
||||||||||||||||||||||| |||||||||| || ||||| | ||||||
Sbjct 798 CAGACTTTCTCCGGCAAAAACTTTCGAGTCTGAAATCTGAAAAACCACCCAA 849
> AT2G03090.1 | Symbols: ATEXPA15, EXP15, ATEXP15, ATHEXP ALPHA
1.3, EXPA15 | expansin A15 | chr2:916854-918643 REVERSE LENGTH=1358
Length=1358
Score = 167 bits (90), Expect = 2e-40
Identities = 348/467 (75%), Gaps = 40/467 (9%)
Strand=Plus/Plus
Query 147 TTCTACGGTGGTAGTGACGCCTCCGGCACAATGGGCGGCGCGTGTGGGTACGGGAACTTG 206
||||| ||||| ||||| || || || |||||||| || || ||||| ||||||||| |
Sbjct 198 TTCTATGGTGGAAGTGATGCTTCAGGAACAATGGGTGGAGCTTGTGGCTACGGGAACCTC 257
Query 207 TACAGCCAAGGATACGGTG-TGAACACGGCGGCGTTGAGCACTGCTCTGTTCAACAACGG 265
||||| ||||| ||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 258 TACAGTCAAGGTTACGG-GACCAACACGGCGGCGTTGAGCACTGCTCTGTTCAACAACGG 316
Query 266 A-TTCAGCTGCGGTGCTTGTTTTGAGATTAAGTGTACTGAT-GACC-CGAGATGGTGTGT 322
|| |||||||| |||||||||||||| |||||| | || ||| || | |||||| |
Sbjct 317 TCTT-AGCTGCGGGGCTTGTTTTGAGATCAAGTGT-CAGAGCGACGGCGCG-TGGTGT-T 372
Query 323 T-CCGGGAAATCCGTCTATTC-TTGTGACGGCGACAAACTTT-TGTCCACCGAATTTCGC 379
| || || | | |||| | |||| || || || || ||| ||||| || || |||
Sbjct 373 TACCTGG---T--G-CTAT-CATTGTCACAGCCACCAA-TTTCTGTCCTCCTAACAACGC 424
Query 380 TCAGCCGAGTGACGAC-GGAGGATGGTGTAATCCGCCGCGAGAGCATTTTGATCTCGC-C 437
|| || | | ||| | || || |||||||| || |||| | ||||| |||||| | |
Sbjct 425 TCTTCCCAATAACG-CTGGTGGTTGGTGTAACCCTCCGCTTCATCATTTCGATCTCTCTC 483
Query 438 ATGCCTATGTTCCTCAA-G-ATCGGTTTGTACCGTGCCGGCATTGTCCCCGTCTCCTATC 495
| |||| | || |||| | || | | |||| || || ||||||| || ||||| |
Sbjct 484 A-GCCTGTTTT--TCAACGCATTGCTCAGTACAAAGCTGGTGTTGTCCCTGTTTCCTA-C 539
Query 496 -GCAGGGTACCTTGTC-G-GAAGATAGGAGGGATAAGATTCACAGTAAACGGATTCAGA- 551
| ||||| || ||| | ||||| ||||| |||||||||||| | ||||| | ||
Sbjct 540 AGAAGGGTTCCGTGTATGAGAAGA--GGAGGTATAAGATTCACAATCAACGG-T-CACTC 595
Query 552 T-ACTTCAATCTTGTTCT-GGTAACTAACGTTGCCGGCGCCGGAGAT 596
| ||||||| ||||| || ||| || || |||| || || ||||||
Sbjct 596 TTACTTCAACCTTGT-CTTGGTGACCAATGTTGGTGGTGCTGGAGAT 641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40388254188
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5