BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934429

Length=226
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G36370.1 | Symbols:  | ubiquitin-protein ligases | chr2:1524...   224    3e-58


> AT2G36370.1 | Symbols:  | ubiquitin-protein ligases | chr2:15247793-15252967 
FORWARD LENGTH=2965
Length=2965

 Score =  224 bits (121),  Expect = 3e-58
 Identities = 167/188 (89%), Gaps = 7/188 (4%)
 Strand=Plus/Plus

Query  1     GAGCTGCTTATCTCTTAAACATGAAGGTGTCCACAATGCTTGAACTTCTCCAGAATTTCC  60
             |||||||||||||||||||||| |||||||| ||  ||||||||||||||| |||||| |
Sbjct  1186  GAGCTGCTTATCTCTTAAACATCAAGGTGTCTACCCTGCTTGAACTTCTCCTGAATTTTC  1245

Query  61    GCGAGCTCACTGAAGTTGGTTTAA-ATGTTGAT-ACAGCTCCTGTAATACCGGTTCAAGA  118
             |||||||||||||||||| ||||| | ||||||  |  ||||| ||||||||||||||| 
Sbjct  1246  GCGAGCTCACTGAAGTTGATTTAACA-GTTGATGTC-TCTCCTATAATACCGGTTCAAGC  1303

Query  119   ATCGGTGGTGTTTTACTCTGGCCAAGGTCATTGTTCGCTATCGAATATCACAAGACTAAC  178
             |||  | |||||||||||||||||||||||||||| |||||||| |||||||||| ||||
Sbjct  1304  ATC--T-GTGTTTTACTCTGGCCAAGGTCATTGTTTGCTATCGAGTATCACAAGATTAAC  1360

Query  179   GCTGGAGG  186
             ||||||||
Sbjct  1361  GCTGGAGG  1368



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10154085298


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5