BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934434
Length=931
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36360.5 | Symbols: | Galactose oxidase/kelch repeat superf... 363 2e-99
> AT2G36360.5 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:15243413-15247627 REVERSE LENGTH=1691
Length=1691
Score = 363 bits (196), Expect = 2e-99
Identities = 275/310 (89%), Gaps = 18/310 (6%)
Strand=Plus/Plus
Query 413 TGGTATTGATGGAAAATTGACCTTCGGTGATCTCTGGTGGTTGGTTCCCGAAGATGATCC 472
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1055 TGGTTTTGATGGAAAATTGACCTTCGGTGATCTCTGGTGGTTAGTTCCCGAAGATGATCC 1114
Query 473 GATAGCCAAGAGGTCTTCTGTACCTCAACTTATAAACCCTCCTGAAATTAATGAGTCAGA 532
||||||||||||||||||||| |||||| || ||||||||||||||||||| ||||||||
Sbjct 1115 GATAGCCAAGAGGTCTTCTGTGCCTCAAGTTGTAAACCCTCCTGAAATTAAAGAGTCAGA 1174
Query 533 GAGAGAATTGGAC------A-A--------A---CAGGAAAGGGGACAAGAGGGATACAG 574
|||||| |||||| | | | ||||||||||||||||| |||| |||
Sbjct 1175 GAGAGAGTTGGACAAGTTGAGAGTTTGGTCACGGCAGGAAAGGGGACAAGATGGATTCAG 1234
Query 575 TATTGTTGAGTTGCAAAAGAAAATGGGAATATCTGTTTCATCAGGGTTGCGCCTTCAAAG 634
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 TATTGTTGACTTGCAACAGAAAATGGGAATATCTGTTTCATCAGGGTTGCGCCTTCAAAT 1294
Query 635 TCCCAATGAGTCAGAAGATCAAGAATTCGTTGAATTAGGAACAAGATTAATTGAGGGAGA 694
|||| | ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1295 TCCCGAGGAGTCAGAAGATCAAGAGTTTGTTGAATTAGGAACAAGATTAATTGAGGGAGA 1354
Query 695 TGTAGCTGAT 704
||||| ||||
Sbjct 1355 TGTAGTTGAT 1364
Score = 272 bits (147), Expect = 4e-72
Identities = 175/187 (94%), Gaps = 7/187 (4%)
Strand=Plus/Plus
Query 210 AAGAGCGTGAAACACCTGGATGGAGTCTGGACCCAACTCAAGCTTCCTGGACAAGCACCA 269
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 775 AAGAGCGTGAAACACC----TGGA---TGGACCCAACTCAAGCTTCCTGGACAAGCACCA 827
Query 270 TCTTCTCGATGTGGTCATACAGTTACATCTGGAGGGCATTATCTTCTGTTATTTGGGGGA 329
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 828 TCATCTCGATGTGGTCATACAGTTACATCTGGAGGACATTATCTTCTGTTATTTGGGGGA 887
Query 330 CATGGAACTGGTGGATGGCTGAGTCGTTATTATGTCTATTATAATGATACTATAATTTTG 389
|||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 888 CATGGAACTGGTGGATGGCTGAGTCGTTATGATGTTTACTATAATGATACTATAATTTTG 947
Query 390 GACAGAG 396
|||||||
Sbjct 948 GACAGAG 954
Score = 250 bits (135), Expect = 2e-65
Identities = 164/178 (92%), Gaps = 1/178 (1%)
Strand=Plus/Plus
Query 705 TCAG-ATTGGAAAGAGTCCACTCCAAGAACTTTACAACTAAAGGAGCTTGGTTCCTTACT 763
|||| |||||||| |||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1406 TCAGCATTGGAAACAGTCCACTCCGAGAACTTTACAACTAAAAGAGCTTGGTTCCTTACT 1465
Query 764 TGGGGATTATCAGCGACTTGTTACCCGAAAATTCGCTACACAGAGCAGCTTAACATCTGC 823
| | |||||||||||||||||||| |||| ||| |||||||||||||||||||||||||
Sbjct 1466 TCGAGATTATCAGCGACTTGTTACACGAATTTTCACTACACAGAGCAGCTTAACATCTGC 1525
Query 824 TGATTTTGGCCTCCCCGGAACAAAGACCTTTATGTTTTATCATATCAAAAGCTCTTCC 881
||||||||||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct 1526 TGATTTTGGCCTCCCTGGAACGAAGACCTTTACGTTTTATCATATCAAAAGTTCTTCC 1583
Score = 106 bits (57), Expect = 4e-22
Identities = 73/80 (91%), Gaps = 4/80 (5%)
Strand=Plus/Plus
Query 3 ATCATCGGCTGAATAAAAATGCATAACTGGGTTCAAGCTTCTTCTTCCGATTTCAGTGGA 62
|||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 91 ATCATCGGCT---T-AAAATGCATCACTGGGTTCAAGCTTCTTCTTCCGATTTCAGTGGA 146
Query 63 ACTCCTCCGCAGGCGCGGAG 82
||||||||||| || |||||
Sbjct 147 ACTCCTCCGCAAGCTCGGAG 166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45512137182
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5