BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934440
Length=938
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40580.1 | Symbols: | Protein kinase superfamily protein | ... 632 2e-180
> AT2G40580.1 | Symbols: | Protein kinase superfamily protein
| chr2:16943864-16945003 FORWARD LENGTH=1140
Length=1140
Score = 632 bits (342), Expect = 2e-180
Identities = 674/832 (81%), Gaps = 32/832 (4%)
Strand=Plus/Plus
Query 35 TTATTGGAGATCTGACGGAGTCTTCATTGGAGA-TAGTCTCTTTTCTTGG-AAA--AGGT 90
|||| | |||||| | |||||||||||||||| | ||| | ||||||| ||| ||||
Sbjct 108 TTATCGAAGATCTAAAAGAGTCTTCATTGGAGACT-GTCAGTGTTCTTGGCAAATTAGGT 166
Query 91 ATCTACGGCTCTGTGTC-CACCAAGAATGATTCAAACTT-GGAGAAATCTTAC-ACGAAG 147
| || ||||| |||||| | || ||| |||||||||||| || |||||| ||| | |||
Sbjct 167 ACCTTCGGCTTTGTGTCTCTCC-AGAGTGATTCAAACTTAGG-GAAATCATACGTC-AAG 223
Query 148 AAGACAAGTACGCTCAAACATTCTGAGAATCTCGAGAGGGAGCTTAAGACCATGCTTCAC 207
||||||||||| ||| |||| || |||||||||||| |||||| | || ||||||||
Sbjct 224 AAGACAAGTACTCTCGAACAGTCCAAGAATCTCGAGAAGGAGCTCAGGATCATGCTTCGT 283
Query 208 TTCCACGCCAATCCCTTCATCGTCCAAGCTTCGTGCCCTCATCTTCACTTCAAGTTTAAC 267
|||||| |||||||||||| |||| |||||| || |||||||||||| | ||||
Sbjct 284 TTCCACAACAATCCCTTCATAGTCCGAGCTTCAAGCGATCATCTTCACTTTGCGACTAAC 343
Query 268 ACCAAAAGCGCGACTTTGTGTTACATCTACATGGAGTATGCGTCCTTAGGCAATCTCGAC 327
||||||||| || ||||||||||||||||||||||||||| |||||||| |||||| ||
Sbjct 344 ACCAAAAGCATGAGTTTGTGTTACATCTACATGGAGTATGCTTCCTTAGGGAATCTCAAC 403
Query 328 AAGATGATCTCTGATTCCGGAGGGAGACTGCCTGAAGATACTGTCAGAAGGGCCACTCGT 387
||||||||||||||| ||||||||||| || ||||||||| ||||||| | |||||||||
Sbjct 404 AAGATGATCTCTGATGCCGGAGGGAGATTGTCTGAAGATAGTGTCAGACGTGCCACTCGT 463
Query 388 ATGATCCTGCAAGGACTTAAGGCTCTACATTCGGAAGGTTACGTCCACTGCGACTTCAAA 447
|||||||| |||||||| |||||||| || || ||||||| |||||||||||| ||||
Sbjct 464 ATGATCCTACAAGGACTCAAGGCTCTTCACTCTGAAGGTTTTGTCCACTGCGACCTCAAG 523
Query 448 CCCTCCAATGTATTTGTCTTCCCTTCCAACACTCCTGGAGAACCATGGGATCTCAAGCTT 507
|| || |||||| ||||||||||||||||||| | |||||| ||||||||||||||||||
Sbjct 524 CCATCAAATGTACTTGTCTTCCCTTCCAACACACGTGGAGAGCCATGGGATCTCAAGCTT 583
Query 508 ACTGGTTTCGGCTTATCCAAAGAGCCTACTATGGACTCTAGTCTA-TTGTTTCCTGGAAC 566
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 584 GCTGGTTTCGGTTTATCCAAAGAGCCTACTATGGACTCTAG-CTTGTTGTTTCCTGGAAC 642
Query 567 CCCCGAG---TACATGCCGCCTGAGGCCCTTGCGCCGAAAACATTTTTTGGCCCAG-ATA 622
|| ||| |||||| ||||||||||| ||| || | | | ||| |||| || | |
Sbjct 643 CCTTGAGGAGTACATGTCGCCTGAGGCCATTGAGCGGGACAGGTTTGTTGGGA-AGGACA 701
Query 623 GATTGATCGGACCAGCCCGTGATGTATGGTCTTTAGGGCGTACGGTTCTTAAGATGCTTG 682
| |||||||||||||||||||| |||||||| |||| |||| ||||||| |||| |||
Sbjct 702 AACTGATCGGACCAGCCCGTGATATATGGTCTCTAGGACGTATTGTTCTTAGGATGTTTG 761
Query 683 GGGCTAATCCTCAAAAGATGGGAG-CTTCTATCGTATGGAGAATAG-A-GTATCCTATCT 739
||| || |||| || || ||| || ||| | |||||| | | | | | |||||
Sbjct 762 GGGGTATTCCTGTTGAGGTGAGAGGCT-CTAACACATGGAGGCT-GTACGAAGA-TATCT 818
Query 740 CTGTGGTGGC-AGCACACTTCTGG-AGGCAGTGCT-GTACGTCGCGGCCTACAGA-TAGG 795
|| || ||| | || |||| || |||| ||||| | | | ||| ||| | || | ||
Sbjct 819 CTCCGGAGGCCA-CAGACTT-TGTTAGGCGGTGCTTGG-CATGGCGCCCTTC-GAATCGG 874
Query 796 CCCACCGTGGATGAGCTTTTGGACCATCCTTTTGTTGCTGACAAACTTACAT 847
|||||||||||||||| || ||||||||||||| |||||| |||||| |||
Sbjct 875 GCCACCGTGGATGAGCTCTTAGACCATCCTTTTGCTGCTGAAAAACTTCCAT 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45863776211
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5