BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934441

Length=406
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G40760.1 | Symbols:  | Rhodanese/Cell cycle control phosphat...   512    9e-145


> AT2G40760.1 | Symbols:  | Rhodanese/Cell cycle control phosphatase 
superfamily protein | chr2:17010048-17012067 FORWARD LENGTH=1526
Length=1526

 Score =  512 bits (277),  Expect = 9e-145
 Identities = 334/362 (92%), Gaps = 2/362 (1%)
 Strand=Plus/Plus

Query  22   CAATGCTACGGTTTTGCCACTGGAGATTTCCGCCGTCCCTCGCCGTCGCTAGAATGCTCT  81
            ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct  1    CAATGCTACGGTTTTACCACTGGAGATTTCCGCCGTCCCTCGCCGTCGTTAGAATGCTCT  60

Query  82   CATCGCCACCACCGCTTCACTCACACTCTCCATTCTCCGGTGGCGTCG-GTAATTCGAGC  140
            |||| ||||| || | |||||||||||||||||||||||| |||| || | ||||||| |
Sbjct  61   CATCACCACCCCCTCCTCACTCACACTCTCCATTCTCCGGCGGCGGCGTG-AATTCGAAC  119

Query  141  TCAATCGGTGGAAACTCCAAACCCGAGTTACTATTCCCTCAATCCCAACCCCAGAATCTC  200
            ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| || |||
Sbjct  120  TCAGTCGGTGGAAACTCCAAACCCGAGTTACAATTCCCTCAATCCCAACCCCATAAACTC  179

Query  201  TCTTCCTCCCCTTCTTCCTCTCTGAAATCCACGGTTGCTTGTTCGAACGCCGGAGCTATA  260
            |||||||| ||||| || ||||||||||||||||| |||||||| |||||||||||||||
Sbjct  180  TCTTCCTCTCCTTCCTCTTCTCTGAAATCCACGGTGGCTTGTTCAAACGCCGGAGCTATA  239

Query  261  CGGAGAAGCATGACTACTGTTTCTCAGTCATTCTCAGATAGAACAGAGTCTAGCGATTCG  320
            |||||||||||| |||||||||||||| |||||||||| |||||||||||||  ||||||
Sbjct  240  CGGAGAAGCATGGCTACTGTTTCTCAGGCATTCTCAGAGAGAACAGAGTCTATTGATTCG  299

Query  321  GATTTAGGCTCGCTCGTTGTGGTTTCATTCTACAAATTCGCTGACTTTCCTGACCATGCT  380
            |||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct  300  GATTTAGGCTCGCTCGTTGTAGTTTCATTCTACAAATTCGCTGATTTTCCTGAGCATGCT  359

Query  381  Ga  382
            ||
Sbjct  360  GA  361



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19202280118


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5