BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934442
Length=727
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40760.1 | Symbols: | Rhodanese/Cell cycle control phosphat... 859 0.0
> AT2G40760.1 | Symbols: | Rhodanese/Cell cycle control phosphatase
superfamily protein | chr2:17010048-17012067 FORWARD LENGTH=1526
Length=1526
Score = 859 bits (465), Expect = 0.0
Identities = 555/595 (93%), Gaps = 20/595 (3%)
Strand=Plus/Plus
Query 129 CGTGTTTCAGGTGGAATCATTCTTGCACCAGAAGGGATCAATGGAAGTATCTGTGGGATT 188
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 399 CGTGTTTCAGGTGGAATCATTCTTGCACCAGAAGGGATAAATGGAAGTATCTGTGGGATT 458
Query 189 CGTGAATCAGTGGA-GAGAGTGTTGGCATTTATACAGAGTGATATCCGATTGAATGGTTT 247
|||||||||||||| || ||||||||||||||||||||| ||| |||| || ||||||||
Sbjct 459 CGTGAATCAGTGGAGGA-AGTGTTGGCATTTATACAGAGAGATGTCCGGTTAAATGGTTT 517
Query 248 GAGGCAAGTGGAGACACCTGTGAGTCCTGAACAAGAAGCAATCCACCATGGACATAGCAG 307
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 518 GAGGCAAGTGGAGACACCTGTGAGTCCTGAGCAAGAAGCAATTCACCATGGACATAGTAG 577
Query 308 TAGCTCTCCTCTTGCAGCTGGTGAAGATGCTCCCTTTAGATGGGATCACGTTAGGGTCAA 367
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 578 TAGCTCTCCTCTTGCAGCTGGTGAAGATGCTCCATTTAGATGGGATCATGTTAGGGTCAA 637
Query 368 ACTCAAGAAAGAGATTGTTACGCTTGGAATGCCTAGTGTCTCGCCAATTGAAAGAGTTGG 427
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 638 ACTTAAGAAAGAGATTGTTACGCTTGGAATTCCTAGTGTCTCGCCAATTGAAAGAGTTGG 697
Query 428 AACATATGTGAGCCCCGAAGAATGGAACGAACTGATCAGTGATCCAGAAACTGTAGTGAT 487
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 AACATATGTGAGTCCCGAAGAATGGAACGAACTGATCAGTGATCCAGAAACTGTAGTGAT 757
Query 488 CGATGTGCGTAATACCTATGAGACTAGAATTGGGAAGTTTAAAGGAGCTGTGGATCCATG 547
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 TGATGTGCGTAATACCTATGAGACTAGAATTGGGAAGTTTAAAGGAGCTGTGGATCCATG 817
Query 548 TACCACAGCTTTCAGAAATTTCCCAACTTGGGTGGAGAATCAATTTGCATTGAAGCAAGA 607
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 818 TACCACAGCTTTCAGAAATTTCCCATCTTGGGTGGAGAATCAATTTGCATTGAAGCAAGA 877
Query 608 AGGCAATGAAACGCAAGCAAATGTGGAGCAAGAAGAATGTTCTGAAA-C-C--A------ 657
||||||||||||||||||||| |||||| |||| || | |||||||| | | |
Sbjct 878 AGGCAATGAAACGCAAGCAAAGGTGGAGAAAGAGGATTTTTCTGAAATCACCCATAAAGA 937
Query 658 ---C-----TGAAAAACCGAAGACGCTGCCACGAATTGCTATGTATTGCACTGGa 704
| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 AGACAAAGCTGAAAAACCGAAGACGCTGCCACGAATTGCTATGTATTGCACTGGA 992
Score = 161 bits (87), Expect = 7e-39
Identities = 113/125 (90%), Gaps = 3/125 (2%)
Strand=Plus/Plus
Query 17 aaGCATGACTACTGTTTCTCAGTCATTCTCAGATAGAACAGAGTCTAGCGATTCAGATTT 76
||||||| |||||||||||||| |||||||||| ||||||||||||| ||||| |||||
Sbjct 245 AAGCATGGCTACTGTTTCTCAGGCATTCTCAGAGAGAACAGAGTCTATTGATTCGGATTT 304
Query 77 AGGCTCGCTCGTTGTAGTTTCATTCTACAAATTCACTGACTTTCCTGACCAT-CGTG-TT 134
|||||||||||||||||||||||||||||||||| |||| |||||||| ||| | || ||
Sbjct 305 AGGCTCGCTCGTTGTAGTTTCATTCTACAAATTCGCTGATTTTCCTGAGCATGC-TGATT 363
Query 135 TCAGG 139
|||||
Sbjct 364 TCAGG 368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35264371194
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5