BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934443
Length=1348
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicase... 1602 0.0
> AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases;ATP
binding;nucleic acid binding | chr2:17013269-17021315
REVERSE LENGTH=5261
Length=5261
Score = 1602 bits (867), Expect = 0.0
Identities = 972/1024 (95%), Gaps = 2/1024 (0%)
Strand=Plus/Plus
Query 21 ATGGGTAGGAGAAAACAATCCAAGCCACAGCGTTCAGTGGGTTTGATCACTCAAACTGGT 80
|||||||||||||| ||||||||||| |||||| |||||||||||||||||| |||||||
Sbjct 1 ATGGGTAGGAGAAAGCAATCCAAGCCCCAGCGTGCAGTGGGTTTGATCACTCCAACTGGT 60
Query 81 TCTGAATCCGATAGAAAGGATTTACCTGGCGACGAAGCTGAGGGTTCGGGGGAAAAGAAT 140
||||||||||||||||| | ||||| |||||||||||||||||||| ||||| ||||||
Sbjct 61 TCTGAATCCGATAGAAATCAATTACCCGGCGACGAAGCTGAGGGTTCAGGGGACAAGAAT 120
Query 141 GTTGAAGATATCGATAAGCCGTACTATGTGAACATATGTTCAACTAGTCGTA-TTTCTGA 199
||||||||||||||||||||||| |||||||||||||||| || |||||| | |||| ||
Sbjct 121 GTTGAAGATATCGATAAGCCGTATTATGTGAACATATGTTTAAGTAGTCG-AGTTTCGGA 179
Query 200 GCAGCAGCAGCACTTTGATATAGCTGAAGTTGTTCTAACGAATTTTAGTTTAAGAGAACG 259
|||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 GCAGCAGCAGAACTTTGATTTAGCTGAAGTTGTTCTAACGAATTTTAGTGTAAGAGAACG 239
Query 260 TGTAGGAAGTAGTAGTACAGTCACAACACCTATTGAGGTTGATCATGATCTGGATTGCTC 319
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 240 TGTAGGAAGTAGTAGTACATTCACAAAACCTATTGAGGTTGATCATGATCTGGATTGCTC 299
Query 320 GTTACGGTTTCGGCTTTGCAATGTGACCAATTTTGTTGATCGGATTAAGCTTGGTCACTG 379
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 GTTACGGTTTCGGCTTTGCAATGTGACTAATTTTGTTGATCGGATTAAGCTTGGTCACTG 359
Query 380 GCCGGTATTGTCTTCCAGTGATATAACTTTGGAATTGGTTGATAATAAAGTGTCTGATGA 439
|||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 GCCGGTTTTGTCTTCGAGTGATATAACTTTGGAATTGGTTGATAATAAGGTGTCTGATGA 419
Query 440 TGAGGCTGGATCAGTGATTTGGTCTGCAAGTTTTGACGGTCCAGGGGAAGGGGTTTCGGG 499
||||| ||| |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 420 TGAGGTTGGGTCAGTGATTTGGTCTGCAAGTTTTGATGGTCCAGGTGAAGGGGTTTCGGG 479
Query 500 TCTTGCTCATTTGGCAAGTATAAAGTTCTTGACTTTAAGGCTGATGCCAGGTAATCAGGG 559
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| ||||
Sbjct 480 TCTTGCTCATTTGGCAAGTATAAAGTTTTTGACTTTAAGGCTCATGCCTGGTAATGAGGG 539
Query 560 CTTGTTGTCTCCTAGAGTTAGAGTTGAGATGCTTCAGCAGGCTTTTGATTCTTGTGATTC 619
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 540 ATTGTTGTCTCCTAGAGTTAGAGTTGAGATGCTTCAGCAGGCTTTTGATGCATGTGATTC 599
Query 620 TCTTCTTGAGAATACAAGGCAGATTTGGAAAAAGAGTATGATTCATGTCATGTCCTGGTT 679
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 TCTTCTTGAGAATACAAGGCAGATTTGGAAAAAGAGTATGATTCATGTCATGTCTTGGTT 659
Query 680 GAGGCCAGAGGTAATGACATCAGAGGCTAGGTATGGGACAAGATTCAACGTGAAGGATAT 739
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 GAGGCCAGAGGTAATGACATCAGAGGCTAGGTATGGGACAAGATTCAACGTCAAGGATAT 719
Query 740 TGAGTCATCAGTTGCGTCGGAAGCTGAAACTTTGGACTCTAGTAAGCAGTCTGGGTTTGA 799
|||||||||||||| | |||||| |||||||||||||||||||||||||||| | |||||
Sbjct 720 TGAGTCATCAGTTGTGACGGAAGATGAAACTTTGGACTCTAGTAAGCAGTCTAGTTTTGA 779
Query 800 TGCTGCTGCTTTTTATGAAGCCATAAAGCCATCAAAGACGAATACGATGCTTGGAGATGA 859
|||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 780 TGCTGCTGCTTTTTATGAAGCCATAAAGCCATCAAAGACGGATGCAATGCTTGGAGATGA 839
Query 860 TATAACTGATTTGCTCCCAGAACTTAGGCCGTACCAACGACGGGCAGCTTATTGGATGGT 919
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CATAGCTGATTTGCTCCCAGAACTTAGGCCGTACCAACGACGGGCAGCTTATTGGATGGT 899
Query 920 TCAGCGAGAGAGAGGCGATCCAATAACGGTGGGAGACAAGGAAGACAACCAATTCAGTTC 979
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 900 TCAGCGAGAGAGAGGCGATCCAATAACGTTGGGAGACAAGGAAGACAACCAATTCATTTC 959
Query 980 ACCTTTGTCTATCTCCGTGGGATTCCTGGACTCTGCTACAAAAATGTTCTTTAACCCATT 1039
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 960 ACCTTTGTCTATCTCCGTGGGATTCCTTGACTCTGCTACAAAAATGTTCTTGAACCCATT 1019
Query 1040 CAGT 1043
||||
Sbjct 1020 CAGT 1023
Score = 464 bits (251), Expect = 9e-130
Identities = 265/272 (97%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 1052 TGCAGATGAAATGGGATTGGGAAAAACGGTTGAACTACTTGCTTGCATCTTTTCTCATCG 1111
||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1080 TGCTGATGAAATGGGATTGGGAAAAACGGTGGAACTACTTGCTTGTATCTTTTCTCATCG 1139
Query 1112 AAAACCAGCGGAGGATGAAATTTCTGTGTCTAATGGTTCATCATTTACTGATGATTTGAA 1171
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1140 AAAACCAGCGGAGGATGAAATTTCTGTGTCTAATGGTTCATCAGTTACTGATGTTTTGAA 1199
Query 1172 CGCTGGCTTGAGAAGATTGAAAAGAGAACGTGTTGAGTGCATATGTGGAGCTGTCAGTGA 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CGCTGGCTTGAGAAGATTGAAAAGAGAACGTGTTGAGTGCATATGTGGAGCTGTCAGTGA 1259
Query 1232 AAGTCGCAAATACAAAGGAGTTTGGGTACAGTGTGACCTTTGTGATGCTTGGCAGCATGC 1291
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AAGTCACAAATACAAAGGAGTTTGGGTACAGTGTGACCTTTGTGATGCTTGGCAGCATGC 1319
Query 1292 CGATTGTGTAGGTTATTCACCTAAAGGGAAAG 1323
||| ||||||||||||||||||||||||||||
Sbjct 1320 CGACTGTGTAGGTTATTCACCTAAAGGGAAAG 1351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66365120490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5