BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934447
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16330.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 739 0.0
AT3G16320.1 | Symbols: CDC27a | Tetratricopeptide repeat (TPR)-... 617 6e-176
> AT3G16330.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G52140.1);
Has 109 Blast hits to 109 proteins in 16 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:5535196-5536063
FORWARD LENGTH=868
Length=868
Score = 739 bits (400), Expect = 0.0
Identities = 506/556 (91%), Gaps = 11/556 (2%)
Strand=Plus/Plus
Query 589 GCTCCTCGCCGACTTTAAAGCCACTCTCAAACGCGGCAAGAATCTTATGTTCCACAACCG 648
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 157 GCTCCTAGCCGACTTTAATGCCACTCTCAAACGCGGCAAGAATCTCATGTTCCACAACCG 216
Query 649 CCGCCGTGTCCCAGTCACCGCCTCGGCTGTTACGTCCCATCCGCAGAAAGAGTACGAGTT 708
|||||||||||||| | |||||||||| |||||||||| ||||| |||||||||||
Sbjct 217 CCGCCGTGTCCCAG-----G-CTCGGCTGTTGCGTCCCATCCACAGAACGAGTACGAGTT 270
Query 709 TAGCTGCAGCGACACTCCTAACTACACATTCCCC-TCTAACATGGCCGCCTCCAAGAAGA 767
||||||||||||||||||||||||||| |||||| || |||||||| |||| ||||||||
Sbjct 271 TAGCTGCAGCGACACTCCTAACTACACGTTCCCCTTC-AACATGGCTGCCTTCAAGAAGA 329
Query 768 AGAGCCACCACAACAGCCTCTTCTCGTATGGTCACGCGCCACCGACCCTTGATGACGACA 827
||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||
Sbjct 330 AGAGCCACCACAACAGCCTCTTCTCCTGTGGTCAAGCGCCACCGACCCTTGATGACGACA 389
Query 828 CTTCCGTCTCCAGAGCCGTCCTAGAGCTGCTCAACAGCGGCGGAAATCATGATCAGGGAA 887
||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||
Sbjct 390 CTTCCGTCTCCAGAGCCGTTCTAGAGCTGCTCAACAGCGGTGGAGATCATGATCAGGGAA 449
Query 888 ATAACACCCCACCTTTGTC-AGTCGAGGCCTTGACGGCGTTATCTACTTACTTGCCCGGA 946
|||||| || |||| || | | ||||||||||||||||||||| | ||| |||| |||
Sbjct 450 GTAACACGCCGGCTTTTTCCATT-GAGGCCTTGACGGCGTTATCTCCCTACCTGCCGGGA 508
Query 947 TTTGGACGGAGTAATCCGTCAGTGAGGCCTTTACGGGTAACGGACTCACCGTTTCCGTTA 1006
||||||||||||| | |||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 509 TTTGGACGGAGTACTTCGTCCGTGAGGCCTTTACGGGTAACGGACTCACCATTCCCGTTA 568
Query 1007 CGGGAAGATTGTGACGTGGCTAACGGATATGTGGACAAGGCAGCGGATGAGTTTGTAAAG 1066
| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 569 AGAGAAGAGGGTGACGTGGCTAACGGACATGTGGACAAGGCAGCGGATGAGTTTATAAAG 628
Query 1067 AAGTTTTACAAAAACTTGAATCAGCAAAAGAAGATGATTGAGTCCTCAACTAATTAAATC 1126
||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 629 AAGTTTTACAAGAACTTGTATCAGCAAAAGAAGATGATTGAGTCCTCACCTAATTAAATC 688
Query 1127 TC-TTTTTTGGCCTTT 1141
|| |||||||||||||
Sbjct 689 TCCTTTTTTGGCCTTT 704
> AT3G16320.1 | Symbols: CDC27a | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:5529534-5534663 FORWARD LENGTH=2352
Length=2352
Score = 617 bits (334), Expect = 6e-176
Identities = 402/436 (92%), Gaps = 0/436 (0%)
Strand=Plus/Plus
Query 85 ATGCTTCCGGAAGGCTCTGGGCATAGATACAAGACACTATAACGCCTGGTTCGGTCTTGG 144
||||| |||||||||||||||||||||||| ||||||||||| || |||| |||||||||
Sbjct 1632 ATGCTACCGGAAGGCTCTGGGCATAGATACGAGACACTATAATGCATGGTACGGTCTTGG 1691
Query 145 AAGGATCTATCTTTGTCAGGAGAAATTCGAGTTTGCGCAGCATCAATTTCAACTGGCTCT 204
|| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1692 AATGACCTATCTTCGTCAGGAGAAATTCGAGTTTGCGCAGCATCAATTTCAACTGGCTCT 1751
Query 205 CCAAATAAATCCAAGATCTTCAGTCATCATGTGTTACTATGGAATTGCTTTGCATGAGTC 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1752 CCAAATAAATCCAAGATCTTCAGTCATCATGTGTTACTATGGAATTGCTTTGCATGAGTC 1811
Query 265 AAAGAGGAACAATGAGGCGTTGAGGATGATGGAGAAGGCTGTACTCACTGATGCGAAGAA 324
|||||| ||| |||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1812 AAAGAGAAACGATGAGGCGTTGATGATGATGGAGAAGGCTGTACTCACTGATGCAAAGAA 1871
Query 325 TCCGGTCGCGAAGTACTTCAAAGCTAATATATTAAATAGTCTCGGTGATTATCACAAAGC 384
|||| || | ||||||| ||| ||| | ||||||| || || |||||||||||||||||
Sbjct 1872 TCCGCTCCCCAAGTACTACAAGGCTCACATATTAACCAGCCTAGGTGATTATCACAAAGC 1931
Query 385 CCAGAAAGTTTTAGAAGAGCTCAAAGAATGTTTTCCTCAAGAGGGCAGCGTCCATGCGTT 444
|||||||||||||||||||||||||||||| ||||||||| |||| |||||||| |
Sbjct 1932 ACAGAAAGTTTTAGAAGAGCTCAAAGAATGTGCTCCTCAAGAAAGCAGTGTCCATGCATC 1991
Query 445 GCTTGGCAAAACATACAATCAGCTAAAACAATACGACAAAGCCCTGTTACATTTCGGCAT 504
||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1992 GCTTGGCAAAATATACAATCAGCTAAAGCAATACGACAAAGCCGTGTTACATTTCGGCAT 2051
Query 505 TGCTTTGGATTTAAGC 520
||||||||||||||||
Sbjct 2052 TGCTTTGGATTTAAGC 2067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56074008765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5