BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg934453 Length=604 Score E Sequences producing significant alignments: (Bits) Value AT3G16330.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 752 0.0 > AT3G16330.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52140.1); Has 109 Blast hits to 109 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:5535196-5536063 FORWARD LENGTH=868 Length=868 Score = 752 bits (407), Expect = 0.0 Identities = 513/563 (91%), Gaps = 12/563 (2%) Strand=Plus/Plus Query 43 GCAAGAAGCTCCTCGCCGACTTTAAAGCCACTCTCAAACGCGGCAAGAATCTTATGTTCC 102 |||| |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 151 GCAA-AAGCTCCTAGCCGACTTTAATGCCACTCTCAAACGCGGCAAGAATCTCATGTTCC 209 Query 103 ACAACCGCCGCCGTGTCCCAGTCACCGCCTCGGCTGTTGCGTCCCATCCGCAGAAAGAGT 162 ||||||||||||||||||||| | ||||||||||||||||||||| ||||| |||| Sbjct 210 ACAACCGCCGCCGTGTCCCAG-----G-CTCGGCTGTTGCGTCCCATCCACAGAACGAGT 263 Query 163 ACGAGTTTAGCTGCAGCGACACTCCTAACTACACATTCCCC-TCTAACATGGCCGCCTCC 221 |||||||||||||||||||||||||||||||||| |||||| || |||||||| |||| | Sbjct 264 ACGAGTTTAGCTGCAGCGACACTCCTAACTACACGTTCCCCTTC-AACATGGCTGCCTTC 322 Query 222 AAGAAGAAGAGCCACCACAACAGCCTCTTCTCGTATGGTCACGCGCCACCGACCCTTGAT 281 |||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||| Sbjct 323 AAGAAGAAGAGCCACCACAACAGCCTCTTCTCCTGTGGTCAAGCGCCACCGACCCTTGAT 382 Query 282 GACGACACTTCCGTCTCCAGAGCCGTCCTAGAGCTGCTCAACAGCGGCGGAAATCATGAT 341 |||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||| Sbjct 383 GACGACACTTCCGTCTCCAGAGCCGTTCTAGAGCTGCTCAACAGCGGTGGAGATCATGAT 442 Query 342 CAGGGAAATAACACCCCACCTTTGTC-AGTCGAGGCCTTGACGGCGTTATCTACTTACTT 400 ||||||| |||||| || |||| || | | ||||||||||||||||||||| | ||| | Sbjct 443 CAGGGAAGTAACACGCCGGCTTTTTCCATT-GAGGCCTTGACGGCGTTATCTCCCTACCT 501 Query 401 GCCCGGATTTGGACGGAGTAATCCGTCAGTGAGGCCTTTACGGGTAACGGACTCACCGTT 460 ||| |||||||||||||||| | |||| ||||||||||||||||||||||||||||| || Sbjct 502 GCCGGGATTTGGACGGAGTACTTCGTCCGTGAGGCCTTTACGGGTAACGGACTCACCATT 561 Query 461 TCCGTTACGGGAAGATTGTGACGTGGCTAACGGATATGTGGACAAGGCAGCGGATGAGTT 520 |||||| | ||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 562 CCCGTTAAGAGAAGAGGGTGACGTGGCTAACGGACATGTGGACAAGGCAGCGGATGAGTT 621 Query 521 TGTAAAGAAGTTTTACAAAAACTTGAATCAGCAAAAGAAGATGATTGAGTCCTCAACTAA 580 | |||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||| Sbjct 622 TATAAAGAAGTTTTACAAGAACTTGTATCAGCAAAAGAAGATGATTGAGTCCTCACCTAA 681 Query 581 TTAAATCTC-TTTTTTGGCCTTT 602 ||||||||| ||||||||||||| Sbjct 682 TTAAATCTCCTTTTTTGGCCTTT 704 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29085571113 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5