BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934453
Length=604
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16330.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 752 0.0
> AT3G16330.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G52140.1);
Has 109 Blast hits to 109 proteins in 16 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:5535196-5536063
FORWARD LENGTH=868
Length=868
Score = 752 bits (407), Expect = 0.0
Identities = 513/563 (91%), Gaps = 12/563 (2%)
Strand=Plus/Plus
Query 43 GCAAGAAGCTCCTCGCCGACTTTAAAGCCACTCTCAAACGCGGCAAGAATCTTATGTTCC 102
|||| |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 151 GCAA-AAGCTCCTAGCCGACTTTAATGCCACTCTCAAACGCGGCAAGAATCTCATGTTCC 209
Query 103 ACAACCGCCGCCGTGTCCCAGTCACCGCCTCGGCTGTTGCGTCCCATCCGCAGAAAGAGT 162
||||||||||||||||||||| | ||||||||||||||||||||| ||||| ||||
Sbjct 210 ACAACCGCCGCCGTGTCCCAG-----G-CTCGGCTGTTGCGTCCCATCCACAGAACGAGT 263
Query 163 ACGAGTTTAGCTGCAGCGACACTCCTAACTACACATTCCCC-TCTAACATGGCCGCCTCC 221
|||||||||||||||||||||||||||||||||| |||||| || |||||||| |||| |
Sbjct 264 ACGAGTTTAGCTGCAGCGACACTCCTAACTACACGTTCCCCTTC-AACATGGCTGCCTTC 322
Query 222 AAGAAGAAGAGCCACCACAACAGCCTCTTCTCGTATGGTCACGCGCCACCGACCCTTGAT 281
|||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||
Sbjct 323 AAGAAGAAGAGCCACCACAACAGCCTCTTCTCCTGTGGTCAAGCGCCACCGACCCTTGAT 382
Query 282 GACGACACTTCCGTCTCCAGAGCCGTCCTAGAGCTGCTCAACAGCGGCGGAAATCATGAT 341
|||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||
Sbjct 383 GACGACACTTCCGTCTCCAGAGCCGTTCTAGAGCTGCTCAACAGCGGTGGAGATCATGAT 442
Query 342 CAGGGAAATAACACCCCACCTTTGTC-AGTCGAGGCCTTGACGGCGTTATCTACTTACTT 400
||||||| |||||| || |||| || | | ||||||||||||||||||||| | ||| |
Sbjct 443 CAGGGAAGTAACACGCCGGCTTTTTCCATT-GAGGCCTTGACGGCGTTATCTCCCTACCT 501
Query 401 GCCCGGATTTGGACGGAGTAATCCGTCAGTGAGGCCTTTACGGGTAACGGACTCACCGTT 460
||| |||||||||||||||| | |||| ||||||||||||||||||||||||||||| ||
Sbjct 502 GCCGGGATTTGGACGGAGTACTTCGTCCGTGAGGCCTTTACGGGTAACGGACTCACCATT 561
Query 461 TCCGTTACGGGAAGATTGTGACGTGGCTAACGGATATGTGGACAAGGCAGCGGATGAGTT 520
|||||| | ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 562 CCCGTTAAGAGAAGAGGGTGACGTGGCTAACGGACATGTGGACAAGGCAGCGGATGAGTT 621
Query 521 TGTAAAGAAGTTTTACAAAAACTTGAATCAGCAAAAGAAGATGATTGAGTCCTCAACTAA 580
| |||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||
Sbjct 622 TATAAAGAAGTTTTACAAGAACTTGTATCAGCAAAAGAAGATGATTGAGTCCTCACCTAA 681
Query 581 TTAAATCTC-TTTTTTGGCCTTT 602
||||||||| |||||||||||||
Sbjct 682 TTAAATCTCCTTTTTTGGCCTTT 704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29085571113
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5