BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934455

Length=664
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G36370.1 | Symbols:  | ubiquitin-protein ligases | chr2:1524...   187    1e-46


> AT2G36370.1 | Symbols:  | ubiquitin-protein ligases | chr2:15247793-15252967 
FORWARD LENGTH=2965
Length=2965

 Score =  187 bits (101),  Expect = 1e-46
 Identities = 128/141 (91%), Gaps = 2/141 (1%)
 Strand=Plus/Plus

Query  524  GCTTCTCTCTAAATGCAAAAGCTGGCTTTCAGTTTTGGCATCATCGAATGACACCGCATT  583
            ||||||||||| |||||||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct  353  GCTTCTCTCTATATGCAAAAACTGGCTTTCAGTGTTGGCATCATCGAATGACAACGCATT  412

Query  584  ACCGAAACTAGAATTGTCTGACCTTATTCAGATTTGGAGTTTTGGTCTCGAGCATGGTT-  642
            ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |  
Sbjct  413  ACCGAAAGTAGAATTATCTGACCTTATTCAGATTTGGAGTTTTGGTCTCGAGCATGCTGG  472

Query  643  AGAATCTTGCGCGAAATCTCT  663
            ||||| ||| || | ||||||
Sbjct  473  AGAAT-TTGTGCCAGATCTCT  492



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32099619933


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5