BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934466
Length=1640
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37730.1 | Symbols: | Protein of unknown function (DUF604) ... 2335 0.0
> AT2G37730.1 | Symbols: | Protein of unknown function (DUF604)
| chr2:15822186-15824538 REVERSE LENGTH=1599
Length=1599
Score = 2335 bits (1264), Expect = 0.0
Identities = 1491/1602 (93%), Gaps = 10/1602 (1%)
Strand=Plus/Plus
Query 22 ATGGCCATCTTCGATCCGTTTAAACTCCGCCATAAACCGCCGTCGATTTTTCCGGCAACG 81
||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||
Sbjct 1 ATGGCCATCTTCGATCCGTTTAAGCTCCACCATAAGCCGCCGTCGATTTTTCCGGCAACA 60
Query 82 ACTGTAAAACCAAGCCATGTTCTTTCCCTCGTCGCCAAGTTCTTCTTCACCATCTGCATC 141
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 61 ACTGTAAAACCAAGCCATGTTCTTTCCCTCGTCGCTAAGTTCTTCTTCACCATATGCATC 120
Query 142 GTCATCTTTTTTGCTATGATCTTCTTCTACATCATATTCTCCGGTTGCTCCGACTGCCAC 201
|||||| |||||||||||| ||||||||| || |||| |||||||||||| ||||||
Sbjct 121 TTCATCTCCGTTGCTATGATCTCCTTCTACATAATCTTCTTCGGTTGCTCCGATTGCCAC 180
Query 202 CACATCAACGGCCACCGTCGCTTAGGCCCTGACAATGTAAACTCCACTACCAACTCTTCA 261
||||||| ||||| |||||||||||| ||||| |||||||||| ||||||||||| |||
Sbjct 181 CACATCACCGGCCTCCGTCGCTTAGGTCCTGAAAATGTAAACTTAACTACCAACTCCTCA 240
Query 262 GCCTCCTCCTTAAAC-ATCC-TCGGACAGAATCAGTCCTCGGAGGCCACCGATATCTCCC 319
||||||||| | || |||| ||| | |||||||||||||||||| || ||||||||||
Sbjct 241 GCCTCCTCC-TCGACTATCCGCCGG-CCGAATCAGTCCTCGGAGGCTACTGATATCTCCC 298
Query 320 ACATAGTTTTCGGGATTGGTGGCTCAATTCAAACGTGGAGAGATCGCAGTCGATACTCCG 379
|||||| ||||||||| |||||||| ||||||||||||||||||||||| || |||||||
Sbjct 299 ACATAGCTTTCGGGATAGGTGGCTCCATTCAAACGTGGAGAGATCGCAGCCGCTACTCCG 358
Query 380 AGCTCTGGTGGCGTCCCAATGTCACACGCGGCTTCGTATGGCTTGAGGAAGAACCGCCTC 439
||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||
Sbjct 359 AGCTCTGGTGGCGTCCCAACGTCACACGCGGCTTCATATGGCTTGACGAAGAACCGCCTC 418
Query 440 TTAATATGACGTGGCTCCCGACTTCTCCGCCGTACCAAGTATCGGCGGATACCTCCCGGT 499
|||||||||| |||||| | |||||||| ||||||||||| |||||||||||||||||||
Sbjct 419 TTAATATGACATGGCTCTCAACTTCTCCACCGTACCAAGTCTCGGCGGATACCTCCCGGT 478
Query 500 TCAATTACACTTGCTGGTTTGGTTCGAGATCAGCTATACGAATGGCGAGAATCATTAAAG 559
||| |||||||||||||| |||||| |||||||||||||||||||||||||| || ||||
Sbjct 479 TCAGTTACACTTGCTGGTATGGTTCAAGATCAGCTATACGAATGGCGAGAATTATCAAAG 538
Query 560 AGAGTTTCGGGCTAGGGTTAACGAACGTGAGATGGTTCGTGATGGGTGACGACGACACCG 619
||| ||| | ||||||||||||| |||||||||||||| | |||||||||||||||||||
Sbjct 539 AGACTTTTGAGCTAGGGTTAACGGACGTGAGATGGTTCATAATGGGTGACGACGACACCG 598
Query 620 TTTTCTTTGTGGACAATCTTGTAACGGTTTTGAATAAGTATGATCACAATCAAATGTATT 679
||||||||||||| |||||| |||||||| | ||||||||||||||||||||||||||||
Sbjct 599 TTTTCTTTGTGGATAATCTTATAACGGTTCTAAATAAGTATGATCACAATCAAATGTATT 658
Query 680 ACATCGGAGGAAATTCAGAGAGTGTGGAACAAGACATAGTTCACTCTTACGCCATGGCTT 739
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 659 ACATCGGAGGAAATTCCGAGAGTGTGGAACAAGACATTGTTCACTCTTACGCCATGGCTT 718
Query 740 ACGGTGGTGGAGGAATAGCAATTAGCTATCCATTGGCCGTGGAGCTTGTAAAGATACTCG 799
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 719 ACGGTGGTGGAGGAATAGCAATTAGCTATCCATTGGCCGTCGAGCTTGTAAAGTTACTCG 778
Query 800 ATGGTTGTATTGATCGATACGCATCGTTATACGGATCTGATCAAAAGATTGAAGCTTGTA 859
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 779 ATGGTTGTATTGATCGTTACGCATCGTTATATGGATCTGATCAAAAGATTGAAGCTTGTT 838
Query 860 TAAGCGAGATTGGAGTTCCCCTGACCAAGGAACTAGGGTTCCATCAGGTTGACATACGTG 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TAAGCGAGATTGGAGTTCCCCTGACCAAGGAACTAGGGTTCCATCAGGTTGACATACGTG 898
Query 920 GCAATCCATACGGTTTACTAGCTGCCCATCCGGTGGCTCCTCTTGTTACGCTCCACCATC 979
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 899 GCAATCCATACGGTTTACTAGCTGCCCATCCGGTGGCTCCTCTGGTTACGCTCCACCATC 958
Query 980 TCGACTATGTTGACCCAATATTTCCGGCGACGACCCAAATAGACGCCCTAAGAAGACTTG 1039
||||||||||||| ||||||||||||| |||||| |||||||||||| |||||||||| |
Sbjct 959 TCGACTATGTTGATCCAATATTTCCGGGGACGACTCAAATAGACGCCTTAAGAAGACTCG 1018
Query 1040 TATCGGCCTACAAGACGGATCCAAGACGGATCCTCCAGCACAGCTTCTGCCATGACCCGA 1099
|||||||||| |||||||||||||| |||||| |||||||||||||||||||||||| ||
Sbjct 1019 TATCGGCCTATAAGACGGATCCAAGCCGGATCATCCAGCACAGCTTCTGCCATGACCAGA 1078
Query 1100 CCCGGGACTGGTTTGTGTCCGTTTCATGGGGCTATACCATCCAAATTTATCCTTCTTTGG 1159
|||| | |||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1079 CCCGTAATTGGTATGTGTCCGTTTCATGGGGCTATACCATCCAAATTTATCCAACTTTGG 1138
Query 1160 TCACCGC-AAAGGAGCTTGAGACGCCATTTCTTACGTTCAAGTCGTGGCGGACGTCAAGC 1218
||||||| |||| |||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1139 TCACCGCTAAAG-AGCTTGAGACGCCATTTCTTACGTTCAAGTCGTGGCGGACTTCGAGC 1197
Query 1219 TCTGAGCCTTTCTCGTTTGATACCCGACCCATCAGCGAAGATCCGTGCGAGAGACCCATT 1278
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1198 TCTGAGCCTTTCTCGTTTGATACCCGACCCATCAGTGAAGATCCGTGCGAGAGACCCCTT 1257
Query 1279 GTTTATTTCTTGGACCGGGTTTATGAGGTCGGGTCGGGTCAGACTCTTACGACGTACCGG 1338
|| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1258 GTCTATTTCTTGGACCGGGTTTATGAGGTCGGTTCGGGTCAGACGCTTACGACGTATCGG 1317
Query 1339 AAACATGTTGATGTCGGCGAGA---CACAATGTAAATCGCTTGATTATTCTCGTGCTAAC 1395
||||||||||| || ||||||| |||||||||| |||| ||||||||||||||| |||
Sbjct 1318 AAACATGTTGAAGTGGGCGAGAGTACACAATGTAATTCGCCTGATTATTCTCGTGCCAAC 1377
Query 1396 TCGGTCGAGTTCATCGACGTTTCCGCTACTACGTGGATGCCGGATCTTTGGAAAATGGCG 1455
|||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||
Sbjct 1378 CCGGTCGAGTTCATCGACGTTTCAACTACTACGTTGACGCCGGATCTTTGGAAAATGGCG 1437
Query 1456 CCACGTAGACAATGTTGTGAAGTTGTCAACAGTGAAGAAGACTCAGAAAGCGTAATCAAT 1515
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1438 CCACGTAGACAATGTTGTGAAATTGTCAACAGTGAAGAAGACTCAGAAAGCGTAATCAAT 1497
Query 1516 GTCAAGATACGGCATTTTAATCCTTTCGAAAGTGTAACTCCTCAGTCAAAGCATCCGAGC 1575
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1498 GTCAAGATACGGCATTTTAATCCTTTGGAAAGTGTAACTCCTCAGTCAAAGCATCCGAAC 1557
Query 1576 GACGAATGGACCGACTCCGTTTTATCTATAGAGACTACTATA 1617
|||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1558 GACGAATGGACCGACTCCGTTTTATCTACAGAGACTA-TATA 1598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81023679630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5