BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934467
Length=961
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37740.1 | Symbols: ATZFP10, ZFP10 | zinc-finger protein 10 ... 1408 0.0
> AT2G37740.1 | Symbols: ATZFP10, ZFP10 | zinc-finger protein 10
| chr2:15827706-15828620 REVERSE LENGTH=915
Length=915
Score = 1408 bits (762), Expect = 0.0
Identities = 872/924 (94%), Gaps = 12/924 (1%)
Strand=Plus/Plus
Query 21 ATGGAGAAACCTGGTGGCTTCTGGATCCCTAAGACAAGCAACAAAGAGTCATCGTGGGAA 80
||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||
Sbjct 1 ATGGAGAAACCTGGTGGCTTCTGGATCCCCAAGAAAAGCAACAAAGAGTCATCTTGGGAA 60
Query 81 GAGCTGGCCTTTGCGGAAGACGATGCAGCCGGATCTTTGTGGCCGCCTAGATCTTACACG 140
|||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 61 GAGCTGGCCTTTGCAGAAGACGATGCCGCCGGATCTTTGTGGCCGCCAAGATCTTATACG 120
Query 141 TGTAGCTTCTGCCGGAGAGAGTTTAAATCGGCTCAAGCCCTCGGTGGCCACATGAACGTT 200
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 121 TGTAGCTTCTGCCGGAGAGAATTTAAATCGGCTCAAGCCCTCGGTGGCCATATGAACGTT 180
Query 201 CACCGAAGAGACAGAGCACGGCTTAAGCAAGCCGACGAACAATACTTATTCCCCAAATAT 260
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 181 CACCGAAGAGACAGAGCACGGCTTAAGCAAGCCGACGACCAATACTTATTCCCCAAATCT 240
Query 261 CCTTCGTCTCCGGAGTATCCATCTCATAAAGATAACGATAATATTCATGAGACCTCTAGC 320
|||||||||| |||||||||||||||||||||| ||||||||||||||| |||||| ||
Sbjct 241 TCTTCGTCTCCAGAGTATCCATCTCATAAAGATAGCGATAATATTCATGAAACCTCTTGC 300
Query 321 TATACTTTGGTTTTTAACTCCAAACCTAATTATTTTAAGACTCAACACTCTTGTGTTATT 380
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TATACTTTGGTTTTTAACACCAAACCTAATTATTTTAAGACTCAACACTCTTGTGTTATT 360
Query 381 GAtctttcttcttcttcttcttTACCATATTTGACTCCTTCTAGGGTTTCTTCTGGTTCA 440
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GATCTTTCTTCGTCTTCTTCTTTACCATATTTGACTCCTTCTAGGGTTTCTTCTGGTTTG 420
Query 441 CCTGGAAAGCAAAAAACTTCTTCTTCTTCTCCTCCTTCTTTCATTGTAGAACCTTCCAAG 500
|||||||||| || | | ||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 CCTGGAAAGC--AACA-TACTTCTTCTTCTCCTCCTTCTTTCGTTGTAGAACCTTCCAAG 477
Query 501 AACTCTAAAAAGATTCCCTCTTCTTCCCCATGGTCGTTCCCGAGTACTTTTGTGGAGCAA 560
||||||||| | ||||||||||||||||||||||||| ||| |||||| |||||||||||
Sbjct 478 AACTCTAAATATATTCCCTCTTCTTCCCCATGGTCGTGCCCAAGTACTGTTGTGGAGCAA 537
Query 561 AAGCGTTGTGATCTATATGAAATTCCGGCTACGGAAGGAGAAAAGAAGAGAAAGACTGAG 620
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 538 AAGAGTTGTGATCTATATGAAATTCCGGCTATGGAAGGAGAAAAGAAGAGAAAGACTGAG 597
Query 621 AGTGATGTGCCGAAAATCGGGCATAAAGCAAAAATTAGTCTTGGAAACACCACTGATCTC 680
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 598 AGTGATGTGCCAAAAATCGGGCATAAAGCAAAACTTAGTCTTGGAAACACCACTGATCTC 657
Query 681 TCGGTGAGTATGAATCTGGTCATCCACCAAAGTTTTCCGATTACTGCTCACGGTAGCGAT 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TCGGTGAGTATGAATCTGGTCATCCACCAAAGTTTTCCGATTACTGCTCACGGTAGCGAT 717
Query 741 GAAGAGATCGGTAGGGGTG-ATATCCGTAAGAGAAGACGACGAAGACATGAGAGTCCGTC 799
|||||||| ||||||| || |||||||||| ||||||||| | ||||||||||||||||
Sbjct 718 GAAGAGATTGGTAGGG-TGGATATCCGTAAAAGAAGACGA--A-GACATGAGAGTCCGTC 773
Query 800 GCAGCAGTC-AGTTCTCATTTCAAGTTTATCTTGTAAGAGTGACATAATTACAAGAAACG 858
||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GCAGCAGTCGATTT-TCATTTCAAGTTTATCTTGTAAGAGTGACATAATTACAAGAAACG 832
Query 859 AGGAGAGCAAACACAAGGGTGATCGCCTTGAGGATTTAGATCTTGAGCTTAGGCTAGGGA 918
|||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 833 AGGAAAGCAAACACAAAGGTGATCGCTTTGAGGATTTAGATCTTGAGCTTAGGCTAGGGA 892
Query 919 -TCGATCCACCAAAGGGAAATTGA 941
| ||||||||||| |||| ||||
Sbjct 893 CT-GATCCACCAAAAGGAATTTGA 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47019161592
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5