BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934469
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37760.2 | Symbols: | NAD(P)-linked oxidoreductase superfam... 1550 0.0
> AT2G37760.2 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr2:15831854-15833920 FORWARD LENGTH=1179
Length=1179
Score = 1550 bits (839), Expect = 0.0
Identities = 924/966 (96%), Gaps = 1/966 (0%)
Strand=Plus/Plus
Query 11 TTTCTAAAAGATGGCAGCTCCGATCCGATTCTTTGAGCTGAACACTGGTGCCCAGTTACC 70
||| ||| |||||||||||||||| ||||||||||| ||||||||||||||| |||||||
Sbjct 57 TTT-TAAGAGATGGCAGCTCCGATTCGATTCTTTGAACTGAACACTGGTGCCAAGTTACC 115
Query 71 TTGCATCGGTCTAGGAACCTACGCCATGGTCGCCACAACGATCGAACATGCAATTAAGAT 130
|||| ||||||||||||||||||| |||||||| ||| |||||||||| || ||||||||
Sbjct 116 TTGCGTCGGTCTAGGAACCTACGCAATGGTCGCGACAGCGATCGAACAGGCGATTAAGAT 175
Query 131 TGGTTACAGGCATATCGACTGTGCTTCGATTTACGGTAACGAGAAAGAGATTGGTGGTGT 190
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 176 TGGTTACAGGCATATCGACTGTGCTTCGATTTACGGAAACGAGAAAGAGATTGGTGGTGT 235
Query 191 GTTGAAGAAGCTGATAGGTGATGGTTTCGTGAAGCGTGAGGAGTTATTTATCACTTCCAA 250
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 236 GTTGAAGAAGCTGATAGGTGATGGTTTTGTGAAGCGTGAGGAGTTATTTATCACTTCCAA 295
Query 251 ACTCTGGAGCAATGATCATTTACCTGAAGATGTGCCTAAGGCATTGGATAAAACATTACA 310
||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||
Sbjct 296 ACTCTGGAGCAATGATCATTTACCTGAAGATGTGCCTAAGGCACTGGAAAAAACGTTACA 355
Query 311 GGATTTACAGATTGACTATGTTGATTTATATCTGATACATTGGCCTGCGAGCTTGAAGAA 370
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GGACTTACAGATTGACTATGTTGATTTATATCTGATACATTGGCCTGCGAGCTTGAAGAA 415
Query 371 GGAATCACTTATGCCAACTCCTGAGATGCTCACTAAACCTGACATACCTAGTACATGGAA 430
||||||||| |||||||| |||||||||||||| |||||||| ||| |||| ||||||||
Sbjct 416 GGAATCACTAATGCCAACACCTGAGATGCTCACAAAACCTGATATAACTAGCACATGGAA 475
Query 431 AGCAATGGAAGCTCTCTATGACTCTGGAAAAGCTCGAGCAATCGGTGTGAGCAATTTCTC 490
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 476 AGCAATGGAAGCTCTCTATGACTCTGGAAAAGCTCGAGCAATCGGTGTAAGCAATTTCTC 535
Query 491 GTCGAAGAAGCTCATAGATCTTCTTAACGTGGCACGTGTATCCCCGGCTGTTAACCAAGT 550
|||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 536 GTCGAAGAAGCTTACAGATCTTCTTAACGTGGCACGTGTAACCCCGGCTGTTAACCAAGT 595
Query 551 TGAATGTCACCCAGTTTGGCAGCAACAAGGTCTGCATGAGCTATGCAAATCCAAAGGAGT 610
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 596 TGAATGTCACCCAGTTTGGCAGCAACAAGGTCTTCATGAGTTATGCAAATCCAAAGGAGT 655
Query 611 TCACTTATCCGGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGT 670
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TCACTTATCTGGTTACTCTCCTTTGGGTTCCCAAAGTAAGGGAGAAGTCAGGCTAAAGGT 715
Query 671 TCTTCAAAACCCGATTGTTGCCGAGGTTGCTGAGAAACTTGGAAAGACCACTGCTCAAGT 730
||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct 716 TCTTCAAAACCCGATTGTTACCGAGGTTGCTGAGAAACTTGGAAAGACCACCGCCCAAGT 775
Query 731 GGCTCTCCGTTGGGGACTCCAAACTGGTCATAGTGTTCTACCAAAGAGCTCGAGCGAGGC 790
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 776 GGCTCTCCGTTGGGGACTCCAAACTGGTCATAGTGTTCTACCAAAGAGCTCGAGCGGGGC 835
Query 791 TCGGCTCCAGGAGAATCTTGATGTTTTTGACTGGTCTATACCTGAAGATCTGTTTGTCAA 850
||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| |||
Sbjct 836 TCGGCTCAAGGAGAATCTTGATGTTTTTGACTGGTCCATACCGGAAGATCTGTTTACCAA 895
Query 851 GTTCTCTAACATTCCCCAGGAGAAGTTATGCCGAGCTGCTGAGTTTGCGCATGAGACACA 910
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 896 GTTCTCTAACATTCCCCAGGAGAAGTTTTGCCGAGCTACTGAGTTTGCGCATGAGACACA 955
Query 911 CGGCTTCTATAAGACCATTGAGGAGTTGTGGGACGGTGAAATTTGAGATAATGTCCCTCC 970
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 956 CGGCTTCTATAAGACCATTGAGGAATTGTGGGACGGTGAAATTTGAGATAATGTCCCTCC 1015
Query 971 TTTCTA 976
||||||
Sbjct 1016 TTTCTA 1021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47772673797
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5