BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934498
Length=1493
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37960.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2196 0.0
> AT2G37960.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G54060.2);
Has 418 Blast hits to 247 proteins in 92 species: Archae -
0; Bacteria - 163; Metazoa - 49; Fungi - 80; Plants - 28; Viruses
- 0; Other Eukaryotes - 98 (source: NCBI BLink). | chr2:15886548-15889220
REVERSE LENGTH=1793
Length=1793
Score = 2196 bits (1189), Expect = 0.0
Identities = 1398/1497 (93%), Gaps = 22/1497 (1%)
Strand=Plus/Plus
Query 1 GATCTTTAG-GGTTTCGAAGAAATGGCGAAATCAAACAGATCCAAGACTTCAGAGCGTAT 59
|||| |||| | ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 19 GATCATTAGTGTTTTCGGAGAAATGGCGAGATCAAACAGATCCAAGACTTCAGAGCGTAT 78
Query 60 AATAGGCAATGGTGAAGTTACTCCGATTCAAGTCGCCTTCCTCGTTGATCGATACCTCTG 119
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 79 AATAGGCAATGGTGAAGTTACTCCGATTCAAGTCGCCTTCCTCGTCGATCGATACCTCTG 138
Query 120 CGATAATCGCTTTTTAAAAACCCGATCTCTTTTCAGATCTGAAGCTTCTTCTCTCATCTC 179
|||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 139 CGATAATCGCTTTTCAAAAACCAGATCACTTTTCAGATCTGAAGCTTCTTCTCTCATCTC 198
Query 180 TAATTCTCCAGTTCGCGAAGTTCCGAATAGTTTGTTACCTTTGAATGAGATTTTGAACGA 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 199 TAATTCTCCAGTTCGCGAAGTTCCGAATAGTTTGTTACCTTTGAATGAGATTTTAAACGA 258
Query 240 ATATATTCGACTCAAGAAGGAGAAGA-TGATGATGGATCAGGAGAAATTGAAACTGGATC 298
||| ||||| |||||||||||||||| || |||||||||||||||||| |||||||||||
Sbjct 259 ATACATTCGTCTCAAGAAGGAGAAGATTG-TGATGGATCAGGAGAAATCGAAACTGGATC 317
Query 299 AAGAGAAAACTCGAGTTCAGAATCTATTGAATGGGATGCAAGATGTGATGAATGCTTATA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 AAGAGAAAACTCGAGTTCAGAATCTATTGAATGGGATGCAAGATGTGATGAATGCTTATA 377
Query 359 ACTCCACTGTCACCGCAGctcctcctcctcctcctccGGCGATTGCGGCCGCAGCTTCAA 418
||| | || |||||| || |||||||||||||||||| |||| || | |||||| | |
Sbjct 378 ACT-C-CT-CCACCGCCGCAGCTCCTCCTCCTCCTCCGGTGATTACGTCGGCAGCTCCCA 434
Query 419 AGGAGGTCCAAGTGGTTGCTTCAAGTTCTATACAGAACAACTTCGGTGTCTCTTCTTCAG 478
||| ||||| |||||||| | ||||| ||||||||| ||||| |||||||||||||
Sbjct 435 TGGATAAACAAGTAGTTGCTTCTACTTCTAAACAGAACAATTTCGGCGTCTCTTCTTCAG 494
Query 479 GCTGCACTGTGTACAACACAGC-TAATGTTATGCCAGTATCATTACCAGGAAACAAAAGA 537
|||||||||||||||| ||| | |||| |||| ||||||||||||||||||||||||||
Sbjct 495 GCTGCACTGTGTACAATACA-CAAAATGCTATGACAGTATCATTACCAGGAAACAAAAGA 553
Query 538 GTTGGGAATTTCACAGCACCTTGTATCAGTCAGTCTATAACCAAAAAGCGAAAGAGTCCT 597
|||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 554 GTTGGGAATTTCACAGGACCTTGTATCACTCAGTCTATAACCAAAAAGAGAAAGAGTCCT 613
Query 598 GAAGTTTCTCTAGGAGCTCCTTCTGTTACTAGGAAAGGTATGAAAAAGATGCCACAAGCT 657
||||||||| ||||||||||||||||| |||||||||||||||||||||| || | | |
Sbjct 614 GAAGTTTCTGTAGGAGCTCCTTCTGTTTCTAGGAAAGGTATGAAAAAGAT-CC-C-A-C- 668
Query 658 GATAAGGTGACTAATTACTTGACATTTCAAACACCATCTGAAATGCAAACGCCGGTGAAC 717
||| || ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 669 ---AAGCTG-CTAATTACTTGACATTTCAAACACCATCTGAAATGCAAACGCCATTGAAC 724
Query 718 AACGGTGTAG---CTAATGAGTCGTCTGATCTTACATCAAGTGTGGCAAAGTGTTTGTTT 774
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 AATGGTGTAGCTACTAATGAGTCGTCTGATCTTACATCAAGTGTGGCAAAGTGTTTGTTT 784
Query 775 GACAAATCAGGCACGTCTCCTCCGACCAATTCAGCTTGTCCAAGGACACCACAACAGAAA 834
||||||||||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||
Sbjct 785 GACAAATCAGGCACGTCTCCTCCGAGCAACTCAACTTGTCCTAGGACACCACAACAGAAA 844
Query 835 GTATCTCCTCAGAGTGATAAAGAAGTTACTCCTACAAACTGCACAATTGTTACTAAGGAG 894
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 845 GTATCTCCTCAGAGTGATAAAGAAGTGACTCCTACAAACTGCACAATTGTTACTAAGGAG 904
Query 895 AGAATCACAGTCAGTCCTCTCAAACAAATTGCTTCTTATACAGTGGAAAGGAGCCATACG 954
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 905 AGAATCACAGTCAGTCCTCTCAAACAAATTGCTTCTTATACAGTGGAGAGGAGCCATACG 964
Query 955 GTTTCTTCTTTTTCGCCGGTAAAGTCTAATCTTAAAATGTCGAGTAAAAGAGATCATGTG 1014
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 965 GTTTCTTCTTTTTCGCCAGTTAAGTCTAATCTGAAAATGTCGAGTAAAAGAGATCATGTG 1024
Query 1015 AAAGGAAGGCTCAACTTCGATGACACTGAAGCCACAATGCACTTAGATGCACCTGCCACT 1074
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1025 AAAGGAAGGCTCAACTTCGATGATACTGAAGCCACAATGCACTTAGACGCACCTGCCACT 1084
Query 1075 GCGGATATAGTTTCAACTTCCTCATCTGGCTCTGAAGCAGAAGCTGATTTATTTGACATA 1134
| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 GTGGATATGGTTTCAACTTCCTCATCTGGCTCTGAAGCAGAAGCTGATTTATTTGACATT 1144
Query 1135 GATTTCTCAAATATAGATCTTCTGAGTGAAGACTTTTCATTTTCGGAGCTACTAGTCGAT 1194
||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1145 GATTTTTCCAATATAGATCTTCTGAGTGAAGACTTTTCATTTTCGGAGCTACTATTCGAT 1204
Query 1195 TTCGATCTTGGTTGTGAAGGAATGCCAGACCCA-TGCCTACCACAGCCATCAAATTTCCA 1253
|| ||| |||||||||||| |||| || | ||| | ||||||||||||||||||||||||
Sbjct 1205 TTTGATATTGGTTGTGAAGAAATGTCA-AACCATTCCCTACCACAGCCATCAAATTTCCA 1263
Query 1254 CATAGAGAATGCTTCAGGGTCATCTCCTGAATCAAGAAACACGAATCTAGAGCCTGACCA 1313
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 CATAGAGACTGCTTCAGGGTCATCTCCTGAATCAAGAAACACGAATCTAGAGCCTGACCA 1323
Query 1314 GCTTGTATCACAGTATACATCAACAGTAACAGAAATGATTCAAGGGAAAGACATGAACAC 1373
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 GGTTGTATCAGAGTATACATCAACAGTAACAGAAATGATTCAAGGGAAAGACATGAACAC 1383
Query 1374 ACAAGGATCTGACTCTATGACTACTGTAAAGTCCATAACAAAATGTCTACAAATCTTAAG 1433
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1384 ACAAGGATCTGACTCTATGACTACTGTAAAGTCCATAACAAAATGCCTACGAATCTTAAG 1443
Query 1434 TCCTGCTAAGAATTGCAGACAGAGAGTCACAATTGACTGATTCGATTCTCCGAGTTG 1490
|||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1444 TCCTGCCAAGAATTGCAGACAGAGAGTCACACTTGACTGATTCGATCCTCCGAGTTG 1500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73644199515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5