BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934500

Length=277
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G37975.1 | Symbols:  | Yos1-like protein | chr2:15891735-158...   425    8e-119


> AT2G37975.1 | Symbols:  | Yos1-like protein | chr2:15891735-15893639 
REVERSE LENGTH=538
Length=538

 Score =  425 bits (230),  Expect = 8e-119
 Identities = 262/277 (95%), Gaps = 3/277 (1%)
 Strand=Plus/Plus

Query  3    AGTTTCCACAGAGAAATCATGGGGTTCTGGACACTAATGGAAGGATTGCTGCTATTTGCA  62
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  119  AGTTTCCACAGAGAAATCATGGGGTTCTGGACACTAATGGAAGGATTGCTACTATTTGCA  178

Query  63   AACGCACTGGCTATTCTCAA-CGAAGACCGTTTTCTAGCTCCCAAAGGATGGACGCTTGC  121
            |||||||||||||| || || |||||||||||||||||||||||||||||||||||| ||
Sbjct  179  AACGCACTGGCTAT-CTTAAACGAAGACCGTTTTCTAGCTCCCAAAGGATGGACGCTCGC  237

Query  122  AGAACTCCACCAAACCGGCAAAAGAAACTCTCTTAAAGGCCAAATCATCGGTCTTATCCA  181
            ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct  238  AGAACTCCACCAAACGGGCAAAAGAAACTCTCTCAAAGGCCAAATCATTGGTCTCATCCA  297

Query  182  CGCCTGCCATTACATGAGGCTTCCTCTTATGCTCTTTAACTTAATTGTCATTGTCTTTAA  241
            |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  298  CGCCTGTCATTACATGAGGCTTCCTCTCATGCTCTTTAACTTAATTGTCATTGTCTTTAA  357

Query  242  GCTTTTCTCCGGTTAAAATGATCAAATCCC-TTCTTG  277
            ||||||||| |||||||||||||||| ||| || |||
Sbjct  358  GCTTTTCTCTGGTTAAAATGATCAAACCCCGTTTTTG  394



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12717740497


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5