BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934507
Length=1525
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39240.1 | Symbols: | RNA polymerase I specific transcripti... 952 0.0
AT1G30590.1 | Symbols: | RNA polymerase I specific transcripti... 898 0.0
AT2G34750.1 | Symbols: | RNA polymerase I specific transcripti... 726 0.0
> AT2G39240.1 | Symbols: | RNA polymerase I specific transcription
initiation factor RRN3 protein | chr2:16384786-16387827
REVERSE LENGTH=1722
Length=1722
Score = 952 bits (515), Expect = 0.0
Identities = 644/706 (91%), Gaps = 10/706 (1%)
Strand=Plus/Plus
Query 738 TTGTTGGACGACTTAATGGTCCTATATTTTGATCATCTTAAATCCTGTCAAGATTCTGGT 797
||||||||||| ||||||||| || |||| ||||||||||||| ||||||||| |||||
Sbjct 787 TTGTTGGACGATTTAATGGTCGAATCTTTTAATCATCTTAAATCTTGTCAAGATGCTGGT 846
Query 798 CGTCTGGATGAGGTGTTTGAAAATCTGTTCGAGTCGTTTGTGAACTTAATTCTGAACGCG 857
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||
Sbjct 847 CGTCTGGATGAGGTGTTTGAAAATCTCTTCGAGTCGTTTGAGAACTTAATTCTGAACACG 906
Query 858 CaaaaaacaaaaaTTTCACAGTTCCTGATGTTCTATGCGTGCTCACTAGATCCTGAAAAT 917
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 CAAAAATTAAAATTTTCACAGTTCCTGATGTTCTATGCGTGCTCACTAGATCCTGAAAAT 966
Query 918 TGTGGTGTGAAATTTGCCAGTAAGCTGTTGGACATATTTCTCAACAGCAACAACAACAAT 977
||||||||||| |||||||||||||||||||| | ||||||| |||||||||||| |
Sbjct 967 TGTGGTGTGAAGTTTGCCAGTAAGCTGTTGGAAAAATTTCTCTCCAGCAACAACAA---T 1023
Query 978 CAAGTTACTAGGACGAATGCAGTGGCTTATCTAGCTAGCTACTTGGCTCGTGCAAAGTTT 1037
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||
Sbjct 1024 CAAGTTACTAGGACGAATGCAGTGACATATCTAGCTAGCTACTTGGCTCGTGCAAATTTT 1083
Query 1038 TTGCCTGCTTCTTTTGTGGCTAGCATGTTGAAAAGATTGGTGGATGAGTGTGCGGATTAC 1097
||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1084 TTGTCTGCTTCTTTTGTGGCTAGCATGTTAAAAAGATTGGTGGATGAGTGTGCTGATTAT 1143
Query 1098 TGCAGAACATGCAATGATGATGCTAGGCCTGAAGAACATCAAGTTTTCTATTCAGGATGT 1157
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1144 TGCAGAACATGCAATGATGATGCTAGGCCTGAAGTACACCAAGTTTTCTATTCAGGATGT 1203
Query 1158 CAGGCAATCTTGTATTTGTTATGCTTCCGAATGAGATCAATCCTAGATGTTCCTCGCTTC 1217
||||| || || || || ||||||| |||||||||||||||||||| ||||||| ||||
Sbjct 1204 CAGGCCATTTTATACGTGCTATGCTTTCGAATGAGATCAATCCTAGAGGTTCCTCACTTC 1263
Query 1218 CGATCGCAGATTACACCATTGGAGTCGGTTTTATCTCACAAACTAGACCCGTTGAAGGTG 1277
| ||| ||| |||||||||||||||| ||||| |||||||||||||||||| ||| |||
Sbjct 1264 CAATCACAGCTTACACCATTGGAGTCAGTTTTGTCTCACAAACTAGACCCGCTGAGGGTA 1323
Query 1278 TGCCTTCCATCTGTAGTTTCTGAGTTCCTT-TATCAAGCCAAAGCCGGTGGTCTGTTCAT 1336
|||||| ||||||||||||||||||||||| || |||||||||||| |||| ||||||||
Sbjct 1324 TGCCTTTCATCTGTAGTTTCTGAGTTCCTTATA-CAAGCCAAAGCCTGTGGCCTGTTCAT 1382
Query 1337 TGTCTCCGACGCCTTCATTTTTGATGACCTA-CCTGAGTCTGAGCTTTCTCGTGCTTTAG 1395
||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1383 TGTCTCCGACGCCTTCATTTTTGATGACCTATCC-GAGTCTGAGCTCTCTCGTGCTTTAG 1441
Query 1396 GTGGCTTCTTCCCATTCGACCCGTGCTTGCTGaaaaaaaCTAACAG 1441
||||||||||||||||| || ||| ||| || ||||| |||||||
Sbjct 1442 GTGGCTTCTTCCCATTC--CC-GTGGTTGTTGGAAAAATCTAACAG 1484
Score = 701 bits (379), Expect = 0.0
Identities = 511/573 (89%), Gaps = 15/573 (3%)
Strand=Plus/Plus
Query 108 ACACTCTTGAAAATTCTATCACGCTCTGTTGTTTGCTTAGATGAAGTTCACCATAAAGTC 167
|||||||||||||||||||||| |||||||| |||||||||||| ||||||||||| |
Sbjct 211 ACACTCTTGAAAATTCTATCACACTCTGTTGCTTGCTTAGATGACGTTCACCATAACCAC 270
Query 168 CTTCTTGATCGTATTTTTGGGACGACAATTTGGGATCACAAACCTAATGTAAATGTAATG 227
|||||| | | |||| |||| |||| |||||||||||||||||||||||| || | |
Sbjct 271 CTTCTTCAACTTATTCTTGGAACGAGAATTTGGGATCACAAACCTAATGT-AA--T-A-- 324
Query 228 TATGCATTGCTGGACCTAATCGTATCACTGGCCACTACTAGTGGAAAGCATCTGAGCTCT 287
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 325 TATGCATTGCTGGACTTAATCATATCACTGGCCACTACTAGTGGAAAGCATCTGAGCTCT 384
Query 288 TGTTTAAATATGCTCGTCTCTAATTTACTTTCGCAACCCCGCATACTCGACAATAAGATG 347
|||||| ||| ||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 385 TGTTTAGATACGCTCGTCTCTAATTTACGTTCGCAACCCCGCAAACTCGACAATAAGATG 444
Query 348 CTGGAACTTCTTTCCCGGGTGCACGCAGCTCTTCACAAGATTTCTTTTTTAGTTCCCCTT 407
|||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 445 CTGGAAGTTCTTTCCAGGGTGCACGCAGCTCTTCACAAGATTTCTTATTTAGTTCCCCTT 504
Query 408 GCTCCCTCGATACTACTGCCCATACTCGCCCAGAGTTTGCCTAGCGTACACGACAAAGAC 467
|||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 505 GCTCCCTCTATATTACTGCCCATACTCGCCCAGAGTATGCCTAGCGTACACGACAAAG-C 563
Query 468 -CGCTTTCAGCTTGTAGTGCCATACGTGGAGAACTTGTTGCAGTTGGAAAACAGCTCAAT 526
||||| ||| ||||||||||||| ||| ||||||||||| ||||||| |||||||||||
Sbjct 564 TCGCTTGCAGGTTGTAGTGCCATATGTGAAGAACTTGTTGAAGTTGGAGAACAGCTCAAT 623
Query 527 C---GGAAAAGTTTTTGGCAACG-TCATTCTTAGGGTGGTAATGGAGAGGTTGCTAGATC 582
| ||||||||| ||||||| | | ||||||| | |||| |||| |||||| | |||||
Sbjct 624 CATCGGAAAAGTTGTTGGCAAGGAT-ATTCTTATGATGGTGATGGGGAGGTTCCGAGATC 682
Query 583 TCGATTTGGAGATTGGGTGGGATGATATTCTCCAAGATGACTCC-GCCATTGCCATGTTT 641
|||||| |||||||| ||| ||||||| ||||||| |||||||| | | | || ||||||
Sbjct 683 TCGATTCGGAGATTGAGTGCGATGATAATCTCCAAAATGACTCCAGTC-TAGCAATGTTT 741
Query 642 GATATGGAACTTGACCTTGCAGTTGAAGGCACT 674
||||||||||||||| |||||||||||||||||
Sbjct 742 GATATGGAACTTGACGTTGCAGTTGAAGGCACT 774
> AT1G30590.1 | Symbols: | RNA polymerase I specific transcription
initiation factor RRN3 protein | chr1:10835794-10840005
REVERSE LENGTH=2303
Length=2303
Score = 898 bits (486), Expect = 0.0
Identities = 995/1228 (81%), Gaps = 86/1228 (7%)
Strand=Plus/Plus
Query 221 TGTAATGTATGCATTGCTGGACCTAATCGTATCACTGGCCACTACTAGTGGAAAGCATCT 280
||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||| ||||
Sbjct 612 TGTAATGGATGCATTGGTGGACCTAATCATATCACTGGCCGCTACTAGTGGAAAATATCT 671
Query 281 -GAGCTCTTGTTTAAATATGCTC----G---TCTC--T-AATTTAC-TTT-CGC---AA- 323
|| | ||||||| ||||||||| | | || | || ||| ||| || ||
Sbjct 672 GGATC-CTTGTTTGAATATGCTCGTAAGAAATTTCAGTCAACCTACTTTTAAGCATAAAG 730
Query 324 ---C-C---CCGCATACTCGACAATAAGATGCTGGAACTTCTTTCC-CGGGTGCACGCAG 375
| | || || | | | ||| ||||||| |||| ||| ||| |||||||| ||||
Sbjct 731 TTTCACAAACC-CA-ATTAGTCAAAAAGATGCAGGAAGTTC-ATCCACGGGTGCATGCAG 787
Query 376 CTCTTCACAAGATTTCTTTTTTAGTTCCCCTTGCTCCCTCG-ATACTACTGCCCATACTC 434
| |||||||||||||||| |||| |||| |||||||||| | || || || | |||||
Sbjct 788 CCCTTCACAAGATTTCTTATTTAATTCCTCTTGCTCCCTGGAAT-TTAGTGTCTATACTT 846
Query 435 GCCCAGAGTTTGCCTAGCGTACACGACAAA-GACCGCTTTCAGCTTGTAGTGCCATACGT 493
|| |||| ||| || | || | ||| |||| | || | | ||||| |||| ||
Sbjct 847 GCGCAGAACATGCGTAAAATTGAC-AAAAAGGACC-C-TT---C-TATAGTGACATATGT 899
Query 494 GGAGAACTTGTTGCA-GTTGGAAAACAGCTCAATCGGAAAAGTTTTTGGCAACGTCATTC 552
||| ||| ||||| | |||||| || |||||||||||| ||||| |||||| ||| ||||
Sbjct 900 GGATAACCTGTTG-AGGTTGGAGAATAGCTCAATCGGAGAAGTTGTTGGCAGCGTGATTC 958
Query 553 TTAGGGTGGTAATGGAGAGGTTGCTAGATCTCGATTTGG-AGATTGGGTGGGATGATATT 611
||| | |||||||||||||| |||||||| | ||||||| | | ||| || |||| |
Sbjct 959 TTATGATGGTAATGGAGAGGATGCTAGATTTAGATTTGGTA-AGTGGATGTGATG--A-- 1013
Query 612 CTCCAAGATGACTCCGCCATTGCCATGTTTGATATGGAACTTGACCTTGCAGTTGAAGGC 671
|| | | ||| | | | ||||||||||||||||||||| |||||||||| ||
Sbjct 1014 CT-CTA-ATG-----G--A--GGCATGTTTGATATGGAACTTGAAGATGCAGTTGAAAGC 1062
Query 672 ACTACCAATGAAGGAGAGGAGTTTCCAGTTCGGTCTCTAAATC--AA-A----A--TGGA 722
|||| ||||||||||| ||||||||||| || ||||||| | || | | ||||
Sbjct 1063 ACTATGAATGAAGGAGACGAGTTTCCAGTGGGGGCTCTAAAACAAAATACTTCAGGTGGA 1122
Query 723 AATGCCGTCTCTG-ACTTGTTGGACGACTTAATGGTCCTATATTTTGATCATCTTA-AAT 780
|||| ||||||| || |||||||| | || |||||||||| |||| |||||| || |||
Sbjct 1123 AATGTAGTCTCTGAAC-TGTTGGACAAATTGATGGTCCTATTTTTTCATCATC-TAGAAT 1180
Query 781 CCTGTCAAGATTCTGGTCGTCTGGATGAGGTGTTTGAAAAT-CTGTTCGAGTCGTTTGTG 839
|||||||| | |||| |||| |||||||||| |||| |||| || || ||||||| | |
Sbjct 1181 CCTGTCAAAACTCTGATCGTTTGGATGAGGTATTTG-AAATCCTCTTTAAGTCGTTCGAG 1239
Query 840 AACTTA-ATTCTGAACGCGCaaaaaacaaaaaTTTCACAGTTCCTGATGTTCTATGCGTG 898
||| || ||||||||| | | ||||||||| |||||||||| |||||||||||||| ||
Sbjct 1240 AAC-TATATTCTGAACACATACAAAACAAAATTTTCACAGTTTCTGATGTTCTATGCATG 1298
Query 899 CTCACTAGATCCTGAAAATTGTGGTGTGAAATTTGCCAGTAAGCTGTTGGACATATTTCT 958
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1299 CTCACTAGATCCTGAAAATTGTGGTGTGAGATTTGCCAGTAAGCTGTTGGACATATATCT 1358
Query 959 CAACAGCAACAACAACAATCAAGTTACTAGGACGAATGCAGTGGCTTATCTAGCTAGCTA 1018
| ||||||| || | || | ||||||||| || ||||||||||||||||||||||||
Sbjct 1359 CTCCAGCAAC-AC-A-TGTCGACTTACTAGGATGAGTGCAGTGGCTTATCTAGCTAGCTA 1415
Query 1019 CTTGGCTCGTGCAAAGTTTTTGCCTGCTTCTTTTGTGGCTAGCATGTTGAAAAGATTGGT 1078
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 TTTGTCTCGTGGAAAGTTTTTGCCTGCTTCTTTTGTGGCTAGCATGTTGAAAAGATTGGT 1475
Query 1079 GGATGAGTGTGCGGATTACTGCAGAACATGCAATGATGATGCT-AGGCCTGAAGAACATC 1137
||| ||||||||||| || ||| |||||||||||||||||| | | ||| |||| |||||
Sbjct 1476 GGACGAGTGTGCGGAATATTGCGGAACATGCAATGATGATG-TGAAGCCAGAAGCACATC 1534
Query 1138 AAGTTTTCTATTCAGGATGTCAGGCAATCTTGTATTTGTTATGCTTCCGAATGAGATCAA 1197
|||| |||||||| ||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 1535 AAGTGTTCTATTCTGGATGTCAGGCAATCTTGTATGTGCTATGCTTCCGAATGAGATCCA 1594
Query 1198 TCCTAGATG-TTCCTCGCTTCCGATCGCAGATTACACCATTGGAGTCGGTTTTATCTCAC 1256
| | || | |||||||||| | ||||||| ||| | |||||||||| |||||||||||
Sbjct 1595 TAGTGGA-GATTCCTCGCTTTCAATCGCAGTTTAGATCATTGGAGTCAATTTTATCTCAC 1653
Query 1257 AAACTAGACCCGTTGAA-GGTGTGCCTTCCATCTGTAGTTTCTGAGTTCCTTTATCAAGC 1315
|||||| |||| | | |||||| ||||||||||||||||| ||||||||| | |||||
Sbjct 1654 AAACTAAACCCACT-ACTGGTGTGTCTTCCATCTGTAGTTTCCGAGTTCCTTAAACAAGC 1712
Query 1316 CAAAGCCGGTGGTCTGTTCATTGTCTCCGACGCCTTCATTTTTGATGACCTAC-CTGAGT 1374
|||||| |||||||||||||||||||| || |||||||||| |||||||||| | ||||
Sbjct 1713 CAAAGCTGGTGGTCTGTTCATTGTCTCAGAATCCTTCATTTTCGATGACCTACAC-GAGT 1771
Query 1375 CTGAGCTTTCTCGTGCTTTAGGTGGCTT 1402
||||||| ||||||||||| ||||||||
Sbjct 1772 CTGAGCTCTCTCGTGCTTTTGGTGGCTT 1799
> AT2G34750.1 | Symbols: | RNA polymerase I specific transcription
initiation factor RRN3 protein | chr2:14660299-14664268
REVERSE LENGTH=2186
Length=2186
Score = 726 bits (393), Expect = 0.0
Identities = 876/1104 (79%), Gaps = 53/1104 (5%)
Strand=Plus/Plus
Query 315 CTTTCGCAAC-CCCGCATACTCGACAATAAGATGCTGGAAC-TTCTTTCCCGGGTGCACG 372
||||||| || |||| ||||| | || |||| | | | || ||||||| |||||||| |
Sbjct 642 CTTTCGC-ACTCCCGTATACT--A-AACAAGAAGATAG-ACGTTCTTTCTCGGGTGCATG 696
Query 373 CAGCTCTTCACAAGATTTCTTTTTTAGTTCCCCTTGCTCCCTCGATACTACTGCCCATAC 432
|||| |||| || || ||| |||| ||||| ||| ||||||| | | || |||| || |
Sbjct 697 CAGCGCTTCTGAAAATCTCTATTTTGGTTCCTCTTACTCCCTCAAGATTAGTGCCAATGC 756
Query 433 TCGCCCAG-AGTTTG-CCTAGCGTACACGACAAA-GACCGCTTTCAGCTTGTAGTGCCAT 489
|| |||| | || || || | ||| | ||| || | | ||| | ||||| ||
Sbjct 757 TCTTCCAGCA-AATGCCCAAG-ATGCAC-AAAAAGGA-C-CATTC-G---ATAGTGATAT 807
Query 490 ACGTGGAGAACTTGTTGCAGTTGGAAAACAGCTCAATCGGAAAAGTTTTTGGCAACGTCA 549
| ||||||| ||| || | ||||| || |||||||| || ||||| ||||| | | |
Sbjct 808 ATGTGGAGAGCTTATTAAAATTGGAGAATAGCTCAATAGGGCAAGTTGGTGGCAGCATGA 867
Query 550 TTCTTAGG-GTGGTAATGGAGAGGTTGCTAGATCTCGATTTGGAGATTGGGTGGGATGAT 608
||||| || |||| ||||||||| ||| |||| | ||||| ||||||| |||||||||
Sbjct 868 TTCTT-GGTATGGTGATGGAGAGGCTGCGAGATTTGGATTTAGAGATTGAATGGGATGAT 926
Query 609 ATTCTC-CAAGATGACTC-CGCCATTGCCATGTTTGATATGGAACTTGACCTTGCAGTTG 666
|||| | ||||||||||| | | | |||||||||||||||||||| ||||| ||
Sbjct 927 ATTC-CACAAGATGACTCTAG-TAGAGGAATGTTTGATATGGAACTTGAAGATGCAGCTG 984
Query 667 AAGGCACTACCAATGAAGGAGAGGAGTTTCCAGTTCGG-TCTCT--A--A--AT-CA--A 716
||||||||| ||||| ||||| ||| |||||| | || |||| | | || || |
Sbjct 985 AAGGCACTATGAATGATGGAGACGAGCTTCCAG-TGGGACCTCTAAAGCAGGATACATCA 1043
Query 717 AATGGAAATGCCGTCTCTGACTTGTTGGACGACTTAATGGTCCTATATTTTGATCATCTT 776
|||||| | |||||| | ||||||||| | || |||||| || |||||| ||||||
Sbjct 1044 GATGGAAGTATAGTCTCTAAGTTGTTGGACAAATTGATGGTCGTAGCTTTTGAGCATCTT 1103
Query 777 AAATCCTGTCAAGATTCTGGTCGTCTGGATGAGGTGTTTGAAAATCTGTTCGAGTCGTTT 836
||||||||||| || ||||||| ||||| |||||||||||| || ||| |||| |||
Sbjct 1104 GAATCCTGTCAAAATGATGGTCGTTTGGATCAGGTGTTTGAAAGCCTCTTCAAGTCATTT 1163
Query 837 GTGAACTTAATTCTGAACGCGCaaaaaacaaaaaTTTCA--CAGTTCCTGATGTTCTATG 894
| ||||| ||||||||| | | ||| | |||| |||| ||||| ||||| |||||||
Sbjct 1164 GAAAACTTCATTCTGAACACATACAAATC-AAAA-TTCACCCAGTTTCTGATATTCTATG 1221
Query 895 CGTGCTCACTAGATCCTGAAAATTGTGGTGTGAAATTTGCCAGTAAGCT-GTTGGACATA 953
| |||||||| ||||||||||||||||||||||||||||| |||||||| || ||| ||
Sbjct 1222 CCTGCTCACTGGATCCTGAAAATTGTGGTGTGAAATTTGCTAGTAAGCTAGT-GGAGATT 1280
Query 954 TTTCTCAACAGCAACAACAACAATCAAGTTACTAGGACGAATGCAGTGGCTTATCTAGCT 1013
|||||| ||||||||| || | || |||||| | || ||| ||||||||||| |||
Sbjct 1281 TTTCTCTCCAGCAACAAG--CA-TGTAGCTACTAGAATGAGTGCGGTGGCTTATCTTGCT 1337
Query 1014 AGCTACTTGGCTCGTGCAAAGTTTTTGCCTGCTTCTTTTGTGGCTAGCATGTTGAAAAGA 1073
|||| ||||||||||| |||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1338 AGCTTCTTGGCTCGTGGAAAGTTTTTGCCTGTTTCCTTTGTGGCTAGCATGTTGAAAAGG 1397
Query 1074 TTGGTGGATGAGTGTGCGGATTACTGCAGAACATGCAATGATGATGCTAGGCCTGAAGAA 1133
||| | |||||||||| || |||||||||||| |||||||||||| |||||||||||| |
Sbjct 1398 TTGATAGATGAGTGTGTGGGTTACTGCAGAACTTGCAATGATGATACTAGGCCTGAAGCA 1457
Query 1134 CATCA-AGTTTTCTAT-TCAGGATGTCAGGCAATCTTGTATTTGTTATGCTTCCGAATGA 1191
||||| | |||||| | || ||||||||||||||| ||||| || | |||||| | ||||
Sbjct 1458 CATCAGA-TTTTCT-TCTCCGGATGTCAGGCAATCATGTATGTGCTCTGCTTCAGGATGA 1515
Query 1192 GATCAATCCTAGATGTTCCTCGCTTCCGATCGCAGATTACACCATTGGAGTCGGTTTTA- 1250
|||| ||| | |||||||||||||| || || ||| |||||||||||||||| | |||
Sbjct 1516 GATCCATCTTGGATGTTCCTCGCTTTCGGTCCCAGCTTACACCATTGGAGTCAATATTAA 1575
Query 1251 TCTCACAAACTAGACCCGTTGAAGGTGTGCCTTCCATCTGTAGTTTCTGAGTTCCTTT-A 1309
| ||||||||| |||| |||| ||| ||||||||||| |||||| | ||||||||| |
Sbjct 1576 TG-CACAAACTAAACCCATTGATGGTATGCCTTCCATCGGTAGTTGCGGAGTTCCTTAGA 1634
Query 1310 TCAAGCCAAAGCCGGTGGTCTGTTCATTGTCTCCGACGCCTTCATTTTTGATGACCTACC 1369
||||| |||| |||||||||||||| ||||| ||| | |||||||| ||||||||||
Sbjct 1635 -CAAGCTAAAGAAGGTGGTCTGTTCATCGTCTCAGACTCGTTCATTTTCGATGACCTACT 1693
Query 1370 TGAGTCTGAGCTTTCTCGTGCTTT 1393
||||||||||||||| ||||||||
Sbjct 1694 TGAGTCTGAGCTTTCCCGTGCTTT 1717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75250616955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5