BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934527
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38152.1 | Symbols: | alpha 1,4-glycosyltransferase family ... 1254 0.0
> AT2G38152.1 | Symbols: | alpha 1,4-glycosyltransferase family
protein | chr2:15984062-15985278 REVERSE LENGTH=1143
Length=1143
Score = 1254 bits (679), Expect = 0.0
Identities = 795/852 (93%), Gaps = 4/852 (0%)
Strand=Plus/Plus
Query 384 GAGGTTAGATTCTTCATGACATGGTTTTCACCAGCAGAGTTTTTTGGGAAGAGAGAACTT 443
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
Sbjct 292 GAGGTTAGATTCTTCATGACATGGTTTTCACCAGCAGAGTATTTTGGGAAAAGAGAAATG 351
Query 444 TTGGCTGTAGAAAGCGTCTTTAAATCACATCCTCGAGGATGCTTAATGATTGTATCGGGA 503
|| ||||||||||||||||||||| | ||||||| ||||||||||||||||||||| |||
Sbjct 352 TTAGCTGTAGAAAGCGTCTTTAAAGCTCATCCTCAAGGATGCTTAATGATTGTATCAGGA 411
Query 504 TCCATGGAGT-CTCAACAAGGAGATAGCATCCTAAAACCGCTAATTGATCGCGGTTACAA 562
||| |||| | || ||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 412 TCCTTGGATTCCT-TACAAGGAGATAGCATCCTAAAGCCGCTAAATGATCGCGGTTACAA 470
Query 563 GGTTTTTGCAGCCACACCAGACATTTCATTGCTTCTTGAGAACACACCAGCTAAATCTTG 622
||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 471 AGTTTTTGCAGCCACACCAGACATGTCATTGCTTCTTGAGAACACACCGGCCAAATCTTG 530
Query 623 GTTTCAAGAAATGAAAAGCTGCAAAAGAGATCCAGGAAGGATACCGTTACATCAGAATCT 682
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GTTTCAAGAAATGAAAAGTTGCAAAAGAGATCCAGGAAGGATACCGTTACATCAGAATCT 590
Query 683 TTCAAACCTCGCGAGGCTAGCAATTCTTTACAAGTACGGAGGTGTGTACCTAGATACCGA 742
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 591 TTCAAACCTCGCGAGGCTAGCGTTTCTTTACAAGTACGGAGGTGTGTATCTAGATACCGA 650
Query 743 TTTCATCGTCACAAGAAGCTTTAAAGGGTTGAGGAATTCAATAGGAGTACAAACATTACT 802
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||| || |
Sbjct 651 TTTCATCGTCACAAGAAGCTTTAAAGGGTTGAAGAATTCAATAGGAGCACAAACAGTAGT 710
Query 803 GGAGGGAGATTCAAAGAACTGGAAAACGTTGAACAACGCGGTTCTGATCTTCGAAAAACA 862
||| ||||||||||||||||||| || ||||||||| ||||||||||||||||| ||| |
Sbjct 711 GGAAGGAGATTCAAAGAACTGGACAAGGTTGAACAATGCGGTTCTGATCTTCGAGAAAGA 770
Query 863 TCACCCGCTTGTTTACAGTTTCATGGAGGAGTTTGCTTCGACTTTTGACGGGAACAAATG 922
|||||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||
Sbjct 771 TCACCCGCTTGTTTACAGTTTCATAGAGGAGTTTGCTTCTACCTTTGATGGGAACAAATG 830
Query 923 GGGACACAATGGTCCTTGCTTGGTAACAAGAGTAGTGCAAAGAGCAAGAGAAACGATTGG 982
||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||
Sbjct 831 GGGACACAATGGTCCTTACTTGGTAACAAGAGTAGCACAAAGAGCACGAGAAACGATTGG 890
Query 983 GGATAACTTCACAGTACTGCCACCAGTAGCATTCTATCCATTCAATTGGTTAGACATTCC 1042
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 GGATAATTTCACAGTACTGCCACCAGTAGCATTCTATCCATTCAATTGGTTAGACATTCC 950
Query 1043 GAGACTGTTTCAAACGCCAAGGAGCA-GCAATGACTCGACGTTACTCAAAACCGATCTGG 1101
||||||||||||||||| || || | |||||||||| ||||||||||||||||||||||
Sbjct 951 AAGACTGTTTCAAACGCCGAG-AGGAAGCAATGACTCAACGTTACTCAAAACCGATCTGG 1009
Query 1102 TGAAGCTGAACAGAGAAAGCTATGGGCTGCATCTATGGAACAAGTTCACCAGAAAACTTA 1161
|||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||| |
Sbjct 1010 TGAAGCTGAATAGAGAAAGCTATGGGCTTCATCTATGGAACAAAATCACCAGAAAACTGA 1069
Query 1162 AGATCGGTAAGGGCAGTGTCATAGACATCATAGTTTCAGATCACTGTGTTGTTTGCAGAG 1221
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1070 AGATCGGTAAGGGCAGTGTCATAGACATCATAATTTCAGACCACTGTGTTGTTTGCAGAG 1129
Query 1222 GAATGCAGAGAT 1233
|||| |||||||
Sbjct 1130 GAATTCAGAGAT 1141
Score = 444 bits (240), Expect = 1e-123
Identities = 279/298 (94%), Gaps = 2/298 (1%)
Strand=Plus/Plus
Query 21 ATGGAGAATGATAATAGTAGCAAGAAGAGTCTCTCGGAAGTACTTGATGTCCGGCAACTC 80
|||||||| |||||| ||| ||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1 ATGGAGAAGGATAATTGTAACAAGAAGAGTCTCTCAGAAGTACTTGATGTCCGGCAATTC 60
Query 81 AGGCACACGAATTCCCCGGTATTCTCTACCGCCATTTTCGGGGTCATAGTGCTGCTCGTT 140
|||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||
Sbjct 61 AGGCACACGAATTCCCCGGTATTCTCTACCGCCATTTTTGCGGTCATAATGCTGCTCGTT 120
Query 141 GTCGCGGGAACAATCCTCTCAAACATGTCTCTAGAATCAACTTTCTTCTGGTCTTCACCG 200
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 121 GTCGCGGGAACAATCCTCTCAAACATGTCCCTAAAATCAACTTTCTTCTGGTCTTCACCA 180
Query 201 ACCTCTGAGGTAATACAAATAAACAAAATGGAGAGAAAGTCATTGGCTCCTCCAAAGAAC 260
||||| ||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||
Sbjct 181 ACCTCCGAGGTAATACAAACAAACAGAATGGAGAGGAAGTCATTGGCTCCTCCAAAGAAC 240
Query 261 AGTACAAGCAGAGACAGGATCGCTTGGCTTCGA-TCACATCTTACAGAATTCGAGGTT 317
| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 241 ACTACAAGCAGAGACAGGATCGCTTGGCTTC-ACTCACATCTAACAGAATTCGAGGTT 297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61796870895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5