BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934530
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38180.1 | Symbols: | SGNH hydrolase-type esterase superfam... 1279 0.0
> AT2G38180.1 | Symbols: | SGNH hydrolase-type esterase superfamily
protein | chr2:15997114-15998906 FORWARD LENGTH=1167
Length=1167
Score = 1279 bits (692), Expect = 0.0
Identities = 815/874 (93%), Gaps = 9/874 (1%)
Strand=Plus/Plus
Query 17 TCGATCATGGTTGGACCAGTAAGACCTCAAATCGTTCTTTTCGGTTCTTCAATTGTTCAA 76
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 68 TCGATCATGGTTGGACCAGTAAGACCTCAAATCGTACTTTTCGGTTCTTCAATTGTTCAA 127
Query 77 TATAGCTTCACTGATCGTGGTTGGGGTGCCACTCTCGCTGACCTCTACTCTCGCACGGCT 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 TATAGCTTCACTGATCGTGGTTGGGGTGCCACTCTCGCTGACCTCTACTCTCGCACGGCT 187
Query 137 GACATCATCCTTCGTGGCTATGCTGGTTGGAATTCTAGGTTTGCCTTGAAGGTTCTTCAC 196
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 GATATCATTCTTCGTGGATATGCTGGTTGGAATTCTAGGTTTGCCTTGAAGGTTCTTCAC 247
Query 197 CAAGTCTTCCCAAAGGATGCTGTGATACAACCTTCTCTGGTGATAGTCTATTTTGGTGGG 256
||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 248 CAAGTATTCCCAAAGGATGCTGTGATACAACCTTCTTTGGTGATAGTCTATTTCGGTGGG 307
Query 257 AATGATTCAACGCATCCTCATCCATCAGGTCATGGACCTCATGTTCCTCTATCTGAATTC 316
||||||||||| ||||||||||| ||||||||||| |||||||||||| |||||||||||
Sbjct 308 AATGATTCAACTCATCCTCATCCTTCAGGTCATGGCCCTCATGTTCCTTTATCTGAATTC 367
Query 317 ATCGAAAACATGAGGAAGATTGGAGAACATCTTTTGAGTCTTTCGGATAAGACTCGTGTC 376
||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||
Sbjct 368 ATCGAAAACATGAGGAAGATTGGTGAACATCTTTTGAGCCTTTCTGATAAAACTCGTGTC 427
Query 377 ATTTTCCTCACTCCGCCGCCTATGAATGAGAAACAGATCGA-AGTCGTTTTTGGAGATGT 435
||||||||||||||||| || |||||||||||||||||||| | | |||||||||||||
Sbjct 428 ATTTTCCTCACTCCGCCACCAATGAATGAGAAACAGATCGAGA-TAGTTTTTGGAGATGC 486
Query 436 AATAAGAGGCCGGAGTAATGAACTGTGCCGTCCATATGCAGAAGAGTTGTTAAATCTATG 495
||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 487 AATAAAAGGCCGGAGTAACGAGTTGTGCCGTCCATATGCAGAAGAGTTGTTAAATCTATG 546
Query 496 CAGAGAGATTAATGTGAAAGGTATCGATATTTGGACCGCAATACAGCAGCAAGATGATTG 555
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 547 CAGAGAGATCAATGTGAAAGGTATCGATATTTGGACCGCGATACAGCAGCAAGATGATTG 606
Query 556 GTTGAACAGCTGCTTCACAGATGGGATCCATTTCACAGCGAAGGCAAGCGAGATTGTTAT 615
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
Sbjct 607 GTTGAACAGCTGCTTCACAGATGGGATCCATTTCACTGCGAAGGCAAGTGAGATTGTTGT 666
Query 616 TAAGGAGATATTGAAGGTAGTGCGAGAAGCGGATTGGAAACCGAGTCTTTACTGGAAGTC 675
||||||||||||||||||| || ||| ||||||||||||||| |||||||||||||| ||
Sbjct 667 TAAGGAGATATTGAAGGTACTGAGAGGAGCGGATTGGAAACCAAGTCTTTACTGGAAATC 726
Query 676 GTTACCGGTTGAGTTTCCATTTGATTTTGATGTTCCAAACTCTATAAGTCTTTATGATCT 735
||||||||||| ||||||||||||||||||| ||||||||||||||| ||| |||| ||
Sbjct 727 ATTACCGGTTGAATTTCCATTTGATTTTGATGCTCCAAACTCTATAAGCCTTCATGACCT 786
Query 736 AGAGTTAACTAGGAACAACCAGTTTGAG-CAACCACACACT-GTAAGCCTTTGTGACCAA 793
||||||||| || |||||||| |||||| || || ||| || |||||||||||||| |||
Sbjct 787 AGAGTTAACCAGAAACAACCATTTTGAGTCA-CCGCAC-CTTGTAAGCCTTTGTGAACAA 844
Query 794 GAGTTAACCAGAAACAAGCAGCAGCTGGAGCCACAACACCCTCTAAGCCTTTGTGACCAC 853
||||||||||||||| | ||||||||||||| | ||||||| ||||||||||||||||
Sbjct 845 GAGTTAACCAGAAAC--G-AGCAGCTGGAGCCGCCACACCCTGTAAGCCTTTGTGACCAT 901
Query 854 GAGTTAACCAGAAACGAGCAGCTGGAGCCACCAC 887
||||||||| ||||||||||||||||||| ||||
Sbjct 902 GAGTTAACCCGAAACGAGCAGCTGGAGCCGCCAC 935
Score = 110 bits (59), Expect = 3e-23
Identities = 101/121 (83%), Gaps = 3/121 (2%)
Strand=Plus/Plus
Query 767 CCACACACTGTAAGCCTTTGTGACCAAGAGTTAACCAGAAACAAGCAGCAGCTGGAGCCA 826
||| || || |||||||| ||||| |||||||||||||||||| | || | ||| ||
Sbjct 761 CCAAACTCTATAAGCCTTCATGACCTAGAGTTAACCAGAAACAA-C--CATTTTGAGTCA 817
Query 827 CAACACCCTCTAAGCCTTTGTGACCACGAGTTAACCAGAAACGAGCAGCTGGAGCCACCA 886
| |||| | ||||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 818 CCGCACCTTGTAAGCCTTTGTGAACAAGAGTTAACCAGAAACGAGCAGCTGGAGCCGCCA 877
Query 887 C 887
|
Sbjct 878 C 878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45311200594
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5