BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934533
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38230.1 | Symbols: ATPDX1.1, PDX1.1 | pyridoxine biosynthes... 1591 0.0
AT2G38210.1 | Symbols: PDX1L4 | putative PDX1-like protein 4 | ... 414 7e-115
> AT2G38230.1 | Symbols: ATPDX1.1, PDX1.1 | pyridoxine biosynthesis
1.1 | chr2:16011456-16012508 FORWARD LENGTH=1053
Length=1053
Score = 1591 bits (861), Expect = 0.0
Identities = 934/970 (96%), Gaps = 1/970 (0%)
Strand=Plus/Plus
Query 6 TCTCAAAACCCTAGaaaaaaaTGGCAGCAACCGGAGTTGTGGCGGTGTACGGCGAAGGAG 65
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 TCTCAAAACCCTAG-AAAAAATGGCAGGAACCGGAGTTGTGGCGGTGTACGGCGAAGGAG 59
Query 66 CCGTGACGGAGACGAAGCAGAAATCTCCCTTCTCCGTCAAGGTTGGTCTCGCTCAGATGC 125
|| ||||||||||||| |||||||||||||||||||| || |||||||||||||||||||
Sbjct 60 CCATGACGGAGACGAAACAGAAATCTCCCTTCTCCGTGAAAGTTGGTCTCGCTCAGATGC 119
Query 126 TTCGTGGCGGTGTAATCATGGACGTCGTCAACGCAGAGCAAGCTCGAATCGCTGAAGAAG 185
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 120 TTCGTGGCGGTGTAATCATGGATGTCGTCAACGCAGAGCAAGCTCGAATCGCTGAAGAAG 179
Query 186 CCGGCGCTTGCGCCGTGATGGCTCTTGAACGTGTTCCCGCCGATATTCGAGCTCAAGGCG 245
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTGGCGCATGCGCCGTGATGGCTCTTGAACGTGTTCCCGCCGATATTCGAGCTCAAGGCG 239
Query 246 GTGTTGCTCGAATGAGCGATCCTGAGATGATTAAAGAAATCAAAAACGCCGTGACGATCC 305
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 240 GTGTTGCTCGAATGAGCGATCCAGAGATGATCAAAGAAATCAAAAACGCCGTGACGATTC 299
Query 306 CGGTGATGGCTAAAGCTAGAATTGGTCATTTCGTTGAAGCTCAGATCTTGGAAGCAATCG 365
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 300 CGGTGATGGCGAAAGCTAGAATTGGTCATTTCGTTGAAGCTCAGATCCTGGAAGCAATCG 359
Query 366 GAGTTGATTACGTCGACGAGAGTGAAGTTCTCACTCTCGCCGACGAAGATAATCACATCA 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAGTTGATTACGTCGACGAGAGTGAAGTTCTCACTCTCGCCGACGAAGATAATCACATCA 419
Query 426 ACAAACATAATTTCAAAATCCCTTTTGTCTGTGGATGTAGGAACCTCGGTGAAGCTTTAA 485
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 420 ACAAACATAATTTCAAAATCCCTTTTGTTTGTGGATGTAGGAATCTCGGTGAAGCTTTAA 479
Query 486 GGCGGATCCGTGAAGGAGCCGCCATGATAAGAACTAAAGGAGAGGCTGGAACTGGAAACG 545
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 480 GGCGGATCCGTGAAGGAGCCGCCATGATAAGAACCAAAGGTGAGGCTGGAACTGGTAACG 539
Query 546 TCGTTGAAGCCGTTAGGCACGTGAGGAGTGTGAACGGAGCTATTCGGTTACTTAGAAACA 605
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 TTGTTGAAGCCGTTAGGCACGTGAGGAGTGTGAACGGAGCTATTCGGTTACTTAGAAGCA 599
Query 606 TGGACGATGACGAAGTTTTCACTTTCGCGAAAAAGATCGCTGCGCCGTATGATTTGGTTG 665
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 TGGACGATGACGAGGTTTTCACTTACGCGAAAAAGATCGCTGCGCCGTATGATTTGGTTG 659
Query 666 TGCAGACGAAGGAGCTTGGGAGGTTACCGGTGGTTCAATTCGCTGCCGGGGGAGTTGCGA 725
||||||| ||||||||||||||||||||||||||||| |||||||| || ||||| ||||
Sbjct 660 TGCAGACTAAGGAGCTTGGGAGGTTACCGGTGGTTCAGTTCGCTGCTGGAGGAGTGGCGA 719
Query 726 CTCCCGCGGACGCGGCTTTGATGATGCAGTTGGGATGTGATGGAGTGTTTGTTGGGTCGG 785
| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CGCCGGCGGATGCGGCGTTGATGATGCAGTTGGGATGTGATGGAGTGTTTGTTGGGTCGG 779
Query 786 GTGTTTTCAAGAGTGGAGATCCGGTGAAAAGGGCTAAGGCGATTGTGCAGGCGGTTACGA 845
|||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 780 GTGTTTTCAAGAGTGGAGATCCGGTGAAGAGGGCTAAGGCTATTGTTCAGGCGGTTACGA 839
Query 846 ATTATAGAGACGCGGCGGTGTTGGCGGAGGTGAGCTGTGGTTTAGGTGAAGCCATGGTTG 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ATTATAGAGACGCGGCGGTGTTGGCGGAGGTGAGCTGTGGTTTAGGTGAAGCCATGGTTG 899
Query 906 GTCTTAATTTGGATGATAAGGTTGAGAGGTTCGCTAGCCGTTCTGAGTAACCAATCAAAT 965
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 900 GTCTTAATTTGGATGATAAGGTTGAGAGGTTCGCTAGTCGTTCTGAGTAACCAATCAAAT 959
Query 966 TTCAGATGTT 975
||||||||||
Sbjct 960 TTCAGATGTT 969
> AT2G38210.1 | Symbols: PDX1L4 | putative PDX1-like protein 4
| chr2:16007012-16007690 FORWARD LENGTH=679
Length=679
Score = 414 bits (224), Expect = 7e-115
Identities = 243/252 (96%), Gaps = 1/252 (0%)
Strand=Plus/Plus
Query 1 CACTCTCTCAAAACCCTAGaaaaaaaTGGCAGCAACCGGAGTTGTGGCGGTGTACGGCGA 60
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 163 CACTCTCTCAAAACCCTAG-AAAAAATGGCAGGAACCGGAGTTGTGGCGGTGTACGGCGA 221
Query 61 AGGAGCCGTGACGGAGACGAAGCAGAAATCTCCCTTCTCCGTCAAGGTTGGTCTCGCTCA 120
||||||| ||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 222 AGGAGCCATGACGGAGACGAAACAGAAATCTCCCTTCTCCGTGAAAGTTGGTCTCGCTCA 281
Query 121 GATGCTTCGTGGCGGTGTAATCATGGACGTCGTCAACGCAGAGCAAGCTCGAATCGCTGA 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 282 GATGCTTCGTGGCGGTGTAATCATGGATGTCGTCAACGCAGAGCAAGCTCGAATCGCTGA 341
Query 181 AGAAGCCGGCGCTTGCGCCGTGATGGCTCTTGAACGTGTTCCCGCCGATATTCGAGCTCA 240
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 AGAAGCTGGCGCATGCGCCGTGATGGCTCTTGAACGTGTTCCCGCCGATATTCGAGCTCA 401
Query 241 AGGCGGTGTTGC 252
||||||||||||
Sbjct 402 AGGCGGTGTTGC 413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5