BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934539
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38270.1 | Symbols: CXIP2, ATGRX2 | CAX-interacting protein ... 1365 0.0
> AT2G38270.1 | Symbols: CXIP2, ATGRX2 | CAX-interacting protein
2 | chr2:16031262-16033076 REVERSE LENGTH=989
Length=989
Score = 1365 bits (739), Expect = 0.0
Identities = 864/923 (94%), Gaps = 13/923 (1%)
Strand=Plus/Plus
Query 4 TTTCTCAGCTCCGACAAAAATGGCTGCAATCACCGTTTCCTCCTCCTTGCACGCCTCAGC 63
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 4 TTTCTCAGCTCCGACAAAAATGGCTGCAATCACCATTTCTTCCTCCTTGCACGCCTCAGC 63
Query 64 TTCTCCGCGTGTTTTTTC-TCCACA------T---ATTACCCCTGTGATCACTCTCTATT 113
|||||||||| || ||| |||||| | | ||||||||||||||| |||||||
Sbjct 64 CTCTCCGCGTG-TTGTTCGTCCACATGTTTCTCGAAATACCCCTGTGATCACCCTCTATT 122
Query 114 CACGTTTCACACCATCCTTCTCTTTTCCATCTCTCTCCTTCACACTCCGTGACACAAC-C 172
|||| ||||||||||||||||| || |||||||||||||||||||||||||||||| | |
Sbjct 123 CACGCTTCACACCATCCTTCTCCTTCCCATCTCTCTCCTTCACACTCCGTGACACAGCTC 182
Query 173 CGGTCTCGTCGTCGTCCCTTCTTAATCGCCTCCGCCGTCAAGTCTCTAACGGAGACGGAG 232
| ||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 183 C-GTCTCGTCGTCGTTCCTTCTTTATCGCCTCCGCCGTCAAATCTCTAACGGAGACGGAG 241
Query 233 CTGCTTCCAATTACAGAGGCTGATTCAATCCCTTCCGCTTCCGGCGTCTACGCTGTCTAC 292
||||||||||| |||||||||||||||||||| ||||||||||| || |||||||| |||
Sbjct 242 CTGCTTCCAATCACAGAGGCTGATTCAATCCCGTCCGCTTCCGGTGTATACGCTGTATAC 301
Query 293 GATAAAAGCGACGAGCTTCAGTTCGTCGGAATATCTCGGAACATCGCCGCAAGTGTCTCT 352
||||| |||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 302 GATAAGAGCGACGAGCTTCAGTTCGTCGGAATTTCTCGGAACATCGCTGCGAGTGTCTCT 361
Query 353 ACACATCTCAAATCTGTGCCGGAGCTTTGTGGCTCCGTCAAGGTTGGTATAGTAGAAGAA 412
| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 362 GCTCATCTCAAATCTGTGCCGGAGCTTTGTGGCTCCGTTAAGGTTGGAATAGTAGAAGAA 421
Query 413 CCGGATAAACCGGTTCTAACACAAGCATGGAAATTATGGATAGAAGAACACATAAAAGTA 472
|| |||||| | ||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 422 CCAGATAAAGCAGTTTTAACACAAGCATGGAAATTATGGATAGAAGAACATATAAAAGTA 481
Query 473 ACCGGAAAAGTCCCACCGGGGAATAAGTCAGGGAACAACACATTTGTCAAACAGACTCCG 532
|| |||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 482 ACTGGAAAAGTTCCGCCGGGGAATAAGTCAGGGAACAACACATTTGTCAAACAAACTCCG 541
Query 533 AGGAAGAAATCTGATATCCGTCTCACTCCAGGTCGCCATGTCGAGCTCACGGTTCCTTTA 592
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 542 AGGAAGAAATCCGATATCCGTCTCACTCCAGGTCGCCATGTTGAGCTCACGGTTCCTTTG 601
Query 593 GAGGAATTGATTGACCGTTTAGTGAAAGAGAGCAAAGTGGTAGCTTTCATAAAAGGATCA 652
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 GAGGAACTGATTGACCGTTTAGTGAAAGAGAGCAAAGTGGTAGCTTTCATAAAAGGATCA 661
Query 653 AGAAGTGCTCCTCAATGTGGATTCTCACAGAGAGTGGTTGGGATTCTTGAAAGCCAAGGA 712
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 662 AGGAGTGCTCCTCAATGTGGATTCTCACAGAGAGTTGTTGGGATTCTTGAAAGCCAAGGA 721
Query 713 GTTGATTATGAAACTGTTGATGTTCTTGACGATGAGTATAATCCCGGGCTAAGGGAGACG 772
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 722 GTTGATTATGAAACTGTTGATGTTCTTGACGATGAGTATAATCATGGGCTAAGGGAGACG 781
Query 773 CTTAAGAACTACAGCAATTGGCCAACGTTTCCGCAGATATTTGTGAAAGGAGAACTTGTA 832
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 782 CTTAAGAACTACAGCAATTGGCCAACGTTTCCACAGATATTTGTGAAAGGAGAACTTGTA 841
Query 833 GGAGGTTGTGATATTTTGACCTCAATGTATGAAAATGGTGAACTTGGCAATATCTTGAAC 892
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 842 GGAGGATGTGATATTTTGACCTCAATGTATGAAAATGGTGAACTTGCCAATATCTTGAAC 901
Query 893 TAGTTTCATCCGATTTTCTTCTC 915
|||||||||||||||||||||||
Sbjct 902 TAGTTTCATCCGATTTTCTTCTC 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44708390830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5