BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934547
Length=1519
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38290.1 | Symbols: ATAMT2, AMT2;1, AMT2 | ammonium transpor... 2348 0.0
> AT2G38290.1 | Symbols: ATAMT2, AMT2;1, AMT2 | ammonium transporter
2 | chr2:16039475-16042383 REVERSE LENGTH=1717
Length=1717
Score = 2348 bits (1271), Expect = 0.0
Identities = 1431/1508 (95%), Gaps = 12/1508 (1%)
Strand=Plus/Plus
Query 18 aaaaTGGCCGGAGCTTACGATCCAAGCTTGCCGGCGGTACCTGAATGGCTCAACAAAGGA 77
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 90 AAAATGGCCGGAGCTTACGATCCAAGCTTGCCGGAGGTTCCTGAATGGCTCAACAAAGGA 149
Query 78 GACAACGCGTGGCAGCTCACGGCGGCGACTCTGGTTGGTTTACAGAGTATGCCAGGTCTT 137
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 150 GACAACGCGTGGCAGCTCACGGCAGCGACTCTGGTTGGTCTACAGAGTATGCCAGGTCTT 209
Query 138 GTTATCCTCTATGCCTCCATCGTCAAGAAGAAATGGGCTGTAAATTCAGCTTTTATGGCT 197
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 210 GTTATCCTCTATGCCTCCATCGTCAAGAAGAAATGGGCTGTGAATTCAGCTTTTATGGCT 269
Query 198 CTTTACGCTTTCGCCGCCGTTCTTCTCTGTTGGGTCCTCCTCTGTTACAAAATGGCTTTT 257
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 270 CTTTACGCTTTCGCCGCCGTTCTTCTCTGTTGGGTTCTCCTCTGTTACAAAATGGCTTTT 329
Query 258 GGAGATGAGCTTTTGCCGTTTTGGGGCAAAGGTGGTCCAGCTTTCGACCAAGGATACCTC 317
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 GGAGAAGAGCTTTTGCCGTTTTGGGGCAAAGGTGGTCCAGCTTTCGACCAAGGATACCTT 389
Query 318 AAGGAACAAGCCAAGATCCCAAACAGTAATGTGCCGGCGCCGTATTTTCCAATGGCGACG 377
|||| |||||| ||||||||||| ||||||||| |||||||||||||||| |||||||||
Sbjct 390 AAGGGACAAGCAAAGATCCCAAATAGTAATGTGGCGGCGCCGTATTTTCCGATGGCGACG 449
Query 378 TTGGTGTATTTTCAGTTCACGTTCGCGGCGATAACGACGATA-TTAGTGGCGGGATCGGT 436
|||||||||||||||||||| ||||||||||||||||||||| || ||||||||||| ||
Sbjct 450 TTGGTGTATTTTCAGTTCACATTCGCGGCGATAACGACGATACTT-GTGGCGGGATCTGT 508
Query 437 GTTGGGGAGGATGAATATTAAAGCTTGGATGGCGTTTGTGCCATTGTGGCTGATCTTTAG 496
|||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||
Sbjct 509 GTTGGGGAGGATGAATATTAAAGCATGGATGGCTTTTGTGCCATTGTGGTTGATCTTTAG 568
Query 497 CTATACAGTTGGAGCTTATAGTATTTGGGGAGGTGGGTTTCTGTATCAGTGGGGAGTTAT 556
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 569 CTACACAGTTGGAGCTTATAGTATATGGGGAGGTGGGTTTCTGTATCAGTGGGGAGTTAT 628
Query 557 TGATTACTCCGGCGGATATGTTATTCATCTCTCCTCCGGTGTCGCCGGATTCGTCGCCGC 616
|||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 629 TGATTATTCCGGCGGTTATGTTATTCATCTCTCCTCCGGTGTTGCCGGTTTCGTCGCTGC 688
Query 617 TTACTGGGTAGGACCAAGGCCTAAGGCTGACAGAGAAAGATTCCCACCGAACAATGTTCT 676
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 689 TTACTGGGTAGGACCAAGGCCTAAGGCTGACAGAGAGAGATTCCCACCGAACAATGTTCT 748
Query 677 AT-TAATGCTTGCCGGAGCTGGGCTTCTATGGATGGGATGGTCCGGATTTAACGGTGGTG 735
| |||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||
Sbjct 749 -TCTAATGCTTGCTGGAGCTGGACTTTTATGGATGGGATGGTCCGGTTTTAACGGTGGTG 807
Query 736 CTCCTTACGCCGCCAACTTAACCTCCTCTATCGCGGTGCTAAACACCAACCTCTCAGCCG 795
|||||||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||||
Sbjct 808 CTCCTTACGCGGCCAACTTAACCTCCTCTATCGCCGTGTTAAACACCAACCTCTCGGCCG 867
Query 796 CCACAAGCCTCCTTGTATGGACCACACTTGATGTCATCTTCTTTGGCAAACCTTCTGTCA 855
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 868 CCACAAGCCTCCTTGTATGGACTACACTTGATGTCATCTTCTTTGGCAAACCTTCTGTCA 927
Query 856 TCGGAGCAATTCAAGGCATGGTTACTGGCCTAGCCGGCGTCACTCCCGGAGCAGGGTTGA 915
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 928 TCGGAGCAATTCAAGGCATGGTTACTGGCTTAGCCGGCGTCACTCCCGGAGCAGGTTTGA 987
Query 916 TCCAAACATGGGCTGCTATAATAGTTGGAGTAGTCTCAGGAACAGTTCCATGGGCTTCTA 975
||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||
Sbjct 988 TCCAAACATGGGCAGCTATAATAATTGGAGTAGTCTCAGGAACAGCTCCATGGGCCTCTA 1047
Query 976 TGATGATCCTTCACAAGAAATCTGCTCTCCTTCAAAAGGTGGATGATACATTAGCGGTGT 1035
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1048 TGATGATCATTCACAAGAAATCCGCTCTCCTTCAAAAGGTGGATGATACATTAGCGGTGT 1107
Query 1036 TTTACACACACGCCGTGGCCGGTTTACTTGGTGGAATAATGACAGGTTTGTTTGCACATC 1095
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 1108 TTTACACACACGCCGTGGCTGGTTTACTTGGTGGAATAATGACAGGGTTGTTTGCACACC 1167
Query 1096 CTGATCTCTGCGTCTTGATACTTCCTCTCCCAGAGACCA-ATGGAGCTTTCTACGGCCGC 1154
||||||||||||| ||| ||||||||||||||| ||||| | |||||||||||||| ||
Sbjct 1168 CTGATCTCTGCGTTTTGGTACTTCCTCTCCCAGCGACCAGA-GGAGCTTTCTACGGTGGC 1226
Query 1155 AATGGCGGCAAACAGCTTTTGAAACAGTTGGCAGGAGCTGCCTTCATTGCCGTCTGGAAT 1214
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1227 AATGGCGGCAAACAGCTTTTGAAACAGTTGGCTGGAGCTGCCTTCATTGCCGTCTGGAAT 1286
Query 1215 GTGGTGTCAACGACTATCATACTACTCGCTATTAGGGTGTTCATACCATTGAGAATGGCT 1274
|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1287 GTGGTGTCGACTACTATCATTCTACTCGCTATTAGGGTGTTCATACCATTGAGAATGGCT 1346
Query 1275 GAGGAAGAGCTCGGGATTGGAGACGACGCTGCACATGGGGAAGAAGCTTATGCTCTTTGG 1334
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1347 GAGGAAGAGCTCGGGATTGGAGACGACGCAGCACATGGGGAAGAAGCTTATGCTCTTTGG 1406
Query 1335 GGTGATGGAGAGAAATTTGATGCTACAAGGCATGTGCAACAG-TTGAGAGAGATCAAGAA 1393
|| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1407 GGAGATGGAGAGAAGTTTGATGCTACAAGGCATGTGCAACAGTTTGAGAGAGATCAAGAA 1466
Query 1394 GCTGCTCATCCTTCTTATGTTCATGGTGCTAGAGGTGTCACCATTGTTCTATGatttttc 1453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 GCTGCTCATCCTTCTTATGTTCATGGTGCTAGAGGTGTCACCATTGTTCTATGATTTTTC 1526
Query 1454 ttattcttcttt-ttgct-attttttgtgtgtattgttttcCTTGTGACATTAGAGATAT 1511
|| ||||| ||| || | ||||||||||| |||| ||||||| ||||||||||||| |
Sbjct 1527 TTCTTCTT-TTTCTTATTTATTTTTTGTGT--ATTGATTTCCTTATGACATTAGAGATGT 1583
Query 1512 GCATGAGT 1519
| ||||||
Sbjct 1584 GAATGAGT 1591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74949413685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5