BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934549
Length=250
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38304.1 | Symbols: | unknown protein; Has 30201 Blast hits... 326 8e-89
> AT2G38304.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:16047924-16048115
REVERSE LENGTH=192
Length=192
Score = 326 bits (176), Expect = 8e-89
Identities = 180/182 (99%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 21 ATGTGGACGTGTAGAAGCAGAAGAAAGATGGAAATTAAGTGTAAAGAAGAAAGGAGTGGT 80
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTGGACGTGTAGAAGCAGAAGGAAGATGGAAATTAAGTGTAAAGAAGAAAGGAGTGGT 60
Query 81 GACGAGAAGCTTGTGAAGGATCGATGGCAAGTCTCTTTACACGTGGGGGGAATGACAAAG 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACGAGAAGCTTGTGAAGGATCGATGGCAAGTCTCTTTACACGTGGGGGGAATGACAAAG 120
Query 141 TTCTTCTTTTTTCAACTTCATCAAAGCTTACAATTTCCTCTCCTCAACAACtttttttGT 200
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCTTCTTTTTTCTACTTCATCAAAGCTTACAATTTCCTCTCCTCAACAACTTTTTTTGT 180
Query 201 TT 202
||
Sbjct 181 TT 182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11360511274
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5