BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934561

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G38580.1 | Symbols:  | Mitochondrial ATP synthase D chain-re...   167    4e-41
  AT2G38570.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: PRC-barre...  75.0    3e-13


> AT2G38580.1 | Symbols:  | Mitochondrial ATP synthase D chain-related 
protein | chr2:16138570-16142588 FORWARD LENGTH=1774
Length=1774

 Score =  167 bits (90),  Expect = 4e-41
 Identities = 100/105 (95%), Gaps = 0/105 (0%)
 Strand=Plus/Plus

Query  46   TCCGCCGATGAAAATCATATCGGAGATGGTGACGTTCCTCCAATTACCGGAGGTCCAGAT  105
            |||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct  205  TCCGTCGATGAAAATCATATCGGAGATGGTGACGTTCCTCAAATTAGCGGAGGTCCAGAT  264

Query  106  GTCGATGAGTCGCAATCATCTCATCAGATCAATGTCGTCGCAACT  150
            | |||||||||||||||||||||||||||| ||||||||||||||
Sbjct  265  GCCGATGAGTCGCAATCATCTCATCAGATCGATGTCGTCGCAACT  309


> AT2G38570.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: PRC-barrel-like 
(InterPro:IPR011033); Has 300 Blast hits to 300 proteins 
in 81 species: Archae - 0; Bacteria - 135; Metazoa - 0; 
Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 128 
(source: NCBI BLink). | chr2:16136689-16138886 REVERSE LENGTH=1298
Length=1298

 Score = 75.0 bits (40),  Expect = 3e-13
 Identities = 57/64 (89%), Gaps = 5/64 (8%)
 Strand=Plus/Minus

Query  151  TCGAGCATTGAGGA-TGGGAAGAGAGA-AGAAGAAGGAAGATGAGCAATTGCACATATCT  208
            |||||||||||| | | |||||||| | |||||||||||||||||||||||||||| |||
Sbjct  200  TCGAGCATTGAGAACT-GGAAGAGA-ACAGAAGAAGGAAGATGAGCAATTGCACATTTCT  143

Query  209  TAAA  212
             |||
Sbjct  142  -AAA  140



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9651407808


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5