BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934564
Length=667
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38310.1 | Symbols: PYL4, RCAR10 | PYR1-like 4 | chr2:160500... 1116 0.0
> AT2G38310.1 | Symbols: PYL4, RCAR10 | PYR1-like 4 | chr2:16050063-16051168
FORWARD LENGTH=1106
Length=1106
Score = 1116 bits (604), Expect = 0.0
Identities = 648/669 (97%), Gaps = 3/669 (0%)
Strand=Plus/Plus
Query 1 AAGAAGACACCATTACTCAGATCAACATGCTCGCCGTTCACCGGCCTTCTTCCGCCGTAT 60
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 163 AAGAAGACACCATTACTCAGATCAACATGCTTGCCGTTCACCGTCCTTCTTCCGCCGTAT 222
Query 61 CTGACGGAGATTCCGTCCAGATTCCGATGATGATCGCGTCGTTTCAAAAACGTTTTCCTT 120
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CAGACGGAGATTCCGTTCAGATTCCGATGATGATCGCGTCGTTTCAAAAACGTTTTCCTT 282
Query 121 CTCTCTCACGCGACTCCACGGCCGCTCGTTTTCACACACACGAGGTTGGTCCTAACCAGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 283 CTCTCTCACGCGACTCCACGGCCGCTCGTTTTCACACACACGAGGTTGGTCCTAATCAGT 342
Query 181 GTTGCTCCGCCGTTATTCAAGAGATCTCCGCTCCAATATCCACCGTTTGGTCCGTCGTCC 240
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 343 GTTGCTCCGCCGTTATTCAAGAGATCTCCGCTCCAATCTCCACCGTTTGGTCCGTCGTAC 402
Query 241 GCCGCTTTGATAACCCACAAGCTTACAAACACTTTCTCAAAAGCTGCAGCGTCATCGGCG 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 403 GCCGCTTTGATAACCCACAAGCTTACAAACACTTTCTCAAAAGCTGTAGCGTCATCGGCG 462
Query 301 GAGACGGCGATAACGTTGGTAGCCTCCGTCAAGTCCACGTCGTCTCTGGCCTCCCTGCCG 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 463 GAGACGGCGATAACGTTGGTAGCCTCCGTCAAGTCCACGTCGTCTCTGGTCTCCCCGCCG 522
Query 361 CTAGCTCCACCGAGAGACTTGATATCCTCGACGACGAACGCCACGTCATCAGTTTCAGCG 420
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 523 CTAGCTCCACCGAGAGACTCGATATCCTCGACGACGAACGCCACGTCATCAGCTTCAGCG 582
Query 421 TTGTTGGTGGTGACCACCGGCTTTCTAACTACCGATCCGTCACGACCCTTCACCCTTCTC 480
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 583 TTGTTGGTGGTGACCACCGGCTCTCTAACTACCGATCCGTAACGACCCTTCACCCTTCTC 642
Query 481 CGATCTCCGGGACCGTCGTTGTGGAGTCTTACGTCGTTGATGTTCCTCCAGGGAACACAA 540
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 643 CGATCTCCGGGACCGTCGTTGTCGAGTCTTACGTCGTTGATGTTCCTCCAGGCAACACAA 702
Query 541 AGGAAGAGACTTGTGACTTTGTTGACGTTATCGTACGATGCAATCTTCAATCTCTTGCGA 600
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 703 AGGAAGAGACTTGTGACTTCGTTGACGTTATCGTACGATGCAATCTTCAATCTCTTGCGA 762
Query 601 AAATAGCCGAGAATACTGCGGCGGAGAGCAAGAAGA---TGTCTCTGTGATGAGTCTTTG 657
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 763 AAATAGCCGAGAATACTGCGGCTGAGAGCAAGAAGAAGATGTCTCTGTGATGAGTCTTTG 822
Query 658 TCGTTGTCG 666
|||||||||
Sbjct 823 TCGTTGTCG 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32250322374
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5