BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934580
Length=1474
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38400.2 | Symbols: AGT3 | alanine:glyoxylate aminotransfera... 2285 0.0
> AT2G38400.2 | Symbols: AGT3 | alanine:glyoxylate aminotransferase
3 | chr2:16083691-16086159 FORWARD LENGTH=1614
Length=1614
Score = 2285 bits (1237), Expect = 0.0
Identities = 1351/1407 (96%), Gaps = 3/1407 (0%)
Strand=Plus/Plus
Query 6 CGAAACAGAG-AAACCATGCAGAGATTCACGGCGAAAAGATCGGTGCAAAACATTTCCGT 64
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 73 CGAAACAGAGAAAACCATGCAGAGATTCGCGGCGAAAAGATCGGTGCAAAACATTTCCGT 132
Query 65 TTCCCTTTGGCGTCGATGTATCTCATCGACGTCTCAGGCTGCGACAGCTTCCGTTAAGGA 124
|| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 133 CTCTCTATGGCGTCGATGTATCTCATCGACGTCTCAGGCAGCGACAGCTTCCGTTAAGGA 192
Query 125 TTCCGATGAGTTTCAGGCGAGGCTTCCTCCGTTTGCTTACACTCCTCCGCCGTATACTGG 184
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 193 TTCCGACGAGTTTCAGGCGAGGCTTCCTCCTTTTGCTTACACTCCTCCGCCGTATACTGG 252
Query 185 TCCTTCCGCCGATGTTATCCTTGAG-AAAAGAAAGGAGTTTCTTAGTCCTTCCATGTTCT 243
|||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||
Sbjct 253 TCCTTCCGCCGATGTTATCCTT-AGCAAAAGGAAGGAGTTTCTCAGTCCTTCCATGTTCT 311
Query 244 GTCTCTATCGCAAACCGTTGAATATTGTGGATGGGAAGATGCAGTATCTATTTGATGAGA 303
|||||||||| |||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 312 GTCTCTATCGGAAACCGTTAAACATTGTGGATGGGAAAATGCAGTATCTATTTGATGAGA 371
Query 304 GTGGTCGGAGATATTTAGATGCATTTGCTGGGATTGCTGTTGTGAATTGTGGACATTGTC 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 GTGGTCGGAGATATTTAGATGCATTTGCTGGGATTGCTGTTGTGAATTGTGGACATTGTC 431
Query 364 ATCCAGATGTGGTTGAGCCAGTGATCAATCAAATCAAGAGACTTCAGCATCCTACTGTTC 423
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 432 ATCCAGATGTGGTTGAGCCAGTGATTAATCAAATCAAGAGGCTTCAGCATCCTACTGTTC 491
Query 424 TTTACCTTAACCATGCCATTGCTGAGTTCTCTGAGGCTCTAGCTTCTAAACTTCCCGGTG 483
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 492 TTTACCTTAACCATGCCATTGCTGATTTCTCTGAGGCTCTTGCTTCTAAACTTCCCGGTG 551
Query 484 ATTTAAAGGTTGTGTTTTTCACTAACTCGGGGACGGAGGCTAATGAATTGGCACTTATGA 543
|| ||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 552 ATCTAAAGGTGGTGTTTTTCACTAACTCAGGGACAGAGGCTAATGAATTGGCGCTTATGA 611
Query 544 TGGCTAAATTGTATACTGGATGTCAAGATATTGTGTCGGTTCGAAACGGGTATCATGGTA 603
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 612 TGGCTAAGTTGTATACTGGATGTCAAGATATTGTGGCGGTTCGAAACGGGTATCATGGTA 671
Query 604 ATGCGGCTGCAACTATGGGGGCTACTGGTCAGAGTATGTGGAAGTTTAATGTGGTTCAGA 663
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 ATGCAGCTGCAACTATGGGGGCTACTGGTCAGAGTATGTGGAAGTTTAATGTGGTTCAGA 731
Query 664 ATAGTGTTCATCATGCTTTGAACCCTGATCCATATAGAGGTGTGTTTGGTTCTGATGGAG 723
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 732 ATAGTGTTCATCATGCTTTGAACCCTGATCCTTATAGAGGTGTGTTTGGTTCTGATGGAG 791
Query 724 AGAAGTATGCAAAGGAATTGCAAGATCTTATTCAATATGGCACGACCGGACACATTGCTG 783
|||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||| |
Sbjct 792 AGAAGTATGCAAAGGATTTGCAAGATCTTATTCAATATGGTACGACTGGTCACATTGCCG 851
Query 784 GTTTTATTTGTGAAGCTATTCAGGGAGTTGGAGGGATTGTGGAACTAGCACCGGGCTATT 843
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 852 GTTTTATTTGTGAAGCTATTCAGGGAGTTGGAGGGATCGTGGAACTAGCACCGGGATATT 911
Query 844 TGTCAGCGGCTTACGATACTGTAAAGAAAGCTGGAGGACTGTTCATCGCGGATGAAGTTC 903
|||||||||||||||||||||| ||||||||||| ||| ||||||| |||||||||||||
Sbjct 912 TGTCAGCGGCTTACGATACTGTTAAGAAAGCTGGTGGATTGTTCATTGCGGATGAAGTTC 971
Query 904 AGTCTGGATTCGCACGTACTGGTAACTTTTGGGGATTTGAGGCTCACAATGTTGTCCCTG 963
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 972 AGTCTGGTTTCGCACGTACTGGTAACTTTTGGGGATTTGAGGCACACAATGTTGTCCCTG 1031
Query 964 ACATAGTAACCATGGCAAAGGGAATTGGGAATGGGTTTCCTTTGGGAGCGGTTGTGACAA 1023
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1032 ACATAGTAACCATGGCAAAGGGAATTGGGAATGGGTTTCCTTTGGGAGCTGTTGTGACAA 1091
Query 1024 CTCCAGAGATAGCAGCAGTATTGACTCGCCGTAGCTACTTCAATACATTTGGTGGAAATT 1083
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 CTCCAGAGATAGCAGGAGTGTTGACTCGCCGTAGCTACTTCAATACATTTGGTGGAAATT 1151
Query 1084 CTGTGTCTACTACAGCTGGTCTCGCTGTTCTGAAGGTGATTGAGAAAGAGAAGCTTCAGG 1143
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1152 CTGTGTCTACTACAGCTGGTCTCGCTGTTCTGAATGTGATTGAGAAAGAGAAGCTTCAGG 1211
Query 1144 AAAATGCGGCAATGGTCGGATCCTATCTGAAAGAAAAACTCACACAGCTGAAAGAGAAAC 1203
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1212 AAAATGCTGCAATGGTTGGATCCTATCTGAAAGAAAAACTCACACAGCTGAAAGAAAAAC 1271
Query 1204 ACGAAATTATCGGGGATGTACGGGGAAGAGGACTGATGCTTGGAGTAGAGCTGGTGAGTG 1263
|||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1272 ACGAGATTATCGGGGATGTCCGGGGAAGAGGACTGATGCTTGGAGTGGAGCTGGTGAGTG 1331
Query 1264 ATCGCAAGCTTAAGACTCCTGCAACCGCTGAGACTCTGCACATTATGGATCAAATGAAAG 1323
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1332 ATCGCAAGCTTAAGACTCCTGCAACCGCCGAGACTCTGCACATTATGGATCAAATGAAAG 1391
Query 1324 AATTGGGTGTGTTGATTGGAAAAGGAGGCTACTTTGGAAATGTCTTTAGAATCACACCAC 1383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 AATTGGGTGTGTTGATTGGAAAAGGAGGCTACTTTGGAAATGTCTTTAGAATCACACCAC 1451
Query 1384 CTCTCTGCTTCACTAAGGATGACGCAG 1410
||||||||||||| ||||| || ||||
Sbjct 1452 CTCTCTGCTTCACCAAGGACGATGCAG 1478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72690389160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5