BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934600
Length=1501
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38510.1 | Symbols: | MATE efflux family protein | chr2:161... 2294 0.0
> AT2G38510.1 | Symbols: | MATE efflux family protein | chr2:16123985-16125445
FORWARD LENGTH=1461
Length=1461
Score = 2294 bits (1242), Expect = 0.0
Identities = 1388/1461 (95%), Gaps = 0/1461 (0%)
Strand=Plus/Plus
Query 21 ATGCAGGTGGGAGAAGAGATGGCGTCACTCACAAAAATAGCTTGCCCGATCGTGATGACA 80
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGCAGGTGGGAGAGGAGATGGCGTCACTCACAAAAATAGCTTGCCCGATTGTGATGACA 60
Query 81 TCACTCCTCATATTCTCGCGATCAATAATCTCTATGTGGTTCTTGAGTCACCTGGGAAAA 140
||||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||
Sbjct 61 TCACTCCTCATATTCTCAAGATCAATAATCTCAATGTGGTTCTTGAGTCATCTCGGAAAA 120
Query 141 GTTGAACTCGCTGGTGGTGCACTCGCCATGGGCTTCGGAAACATCACCGGAGTCTCCATA 200
|| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| ||
Sbjct 121 GTCGAACTCGCTGGTGGTGCACTCGCTATGGGCTTTGGAAACATCACTGGAGTCTCCGTA 180
Query 201 CTCAAAGGCCTTTCCGTTGGTATGGACCCAATCTGTGGCCAAGCCTTCGGAGCCAAACGC 260
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTAAAGGCCTTTCCGTTGGTATGGACCCAATCTGTGGCCAAGCCTTCGGAGCCAAACGT 240
Query 261 TGGACTGTACTGAGCCACACGTTTCAGAAAATGTTCTGTCTCTTAATTGTCGTCTCTGCT 320
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 TGGACCGTACTTAGCCACACGTTTCAGAAAATGTTCTGTCTCTTAATTGTCGTCTCTGTT 300
Query 321 CCAATCGCCGTTGCGTGGCTCAACATCGAACCCATTTTCCTATGGTTAGGTCAGGACCCG 380
|||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 301 CCAATCGCCGTTACGTGGCTCAACATCGAACCCATTTTCCTACGGTTGGGTCAGGACCCA 360
Query 381 GATATTACCAAGGTCGCCAAAACCTACATGCTCTTCTTCGTCCCTGAGCTCCTGGCTCAA 440
|||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 361 GATATTACCAAGGTAGCCAAAACCTATATGCTCTTCTTCGTCCCTGAGCTCTTGGCTCAG 420
Query 441 GCCATGCTCCATCCGCTTCGAACATTCCTCAGAACGCAAGGCTTAACGTCACCGCTGACT 500
||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||
Sbjct 421 GCCATGCTCCATCCGCTTCGAACGTTCCTTAGAACGCAAGGCTTAACATCACCGCTCACG 480
Query 501 ATATCTGCCATTGTATCCATTCTTCTTCATCCTCTCTTCAACTACGTCTTCGTCGTGCGT 560
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 ATATCTGCCATTGTATCCATTCTTCTTCATCCTCTCTTCAACTACGTCTTTGTCGTGCGT 540
Query 561 ATGCGTTTAGGCGTTAAGGGTGTTGCAATCGCAATGGCTTTTAACACAATGAATATCAAC 620
||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||| ||
Sbjct 541 ATGCGTTTAGGCGTTAAGGGTGTGGCCATCGCAATGGCTTTCAACACTATGAATATCGAC 600
Query 621 GTTGGACTGCTCGTTTACACGTGCTTCTCGGATTCTCTAATCAAACCGTGGGAAGGGCTG 680
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTGGGACTGCTCGTTTATACGTGCTTCTCGGATTCTCTAATCAAACCGTGGGAAGGGCTC 660
Query 681 GCTTTGCGGTCGCTTTTCCGCGGCTGGTGGCCGCTGCTTTCACTAGCCGCACCAAGCGCC 740
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 661 GCTTTGCGGTCACTTTTCCGCGGCTGGTGGCCGCTGCTTTCTCTAGCCGCACCAAGCGCT 720
Query 741 ATCTCGGTGTGTTTGGAGTATTGGTGGTATGAGATCATGCTTTTTCTTTGTGGGCTTCTT 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATCTCGGTGTGTTTGGAGTATTGGTGGTATGAGATCATGCTTTTTCTTTGTGGGCTTCTT 780
Query 801 GGGAACCCTAAAGCAAGCGTGGCCGCCATGGGAATATTGATTCAGACCACGGGGATACTA 860
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 GGGAACCCTAAAGCAAGCGTGGCCGCCATGGGAATATTGATTCAGACCACCGGGATACTA 840
Query 861 TACGTAGTCCCGTTTGCTATAAGCAGCGCCATTGCAACCCGTGTAGGTCACGCACTTGGA 920
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 841 TACGTAGTCCCGTTTGCTATTAGCAGCGCCATTGCAACCCGTGTAGGTCACGCTCTTGGA 900
Query 921 GGCGGTCAACCCACACGGGCGCAATGTACGACCGTGATTGGTTTGATACTCGCGGTAGCG 980
||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 901 GGCGGCCAACCAACACGGGCACAATGTACGACCGTGATTGGCTTGATACTCGCGGTAGCG 960
Query 981 TACGGTTTAGCAGCAGCTGTTTTTGTGACGGCGCTTAGGTCGGTTTGGGGAAAGATGTTC 1040
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 961 TACGGTTTAGCAGCTGCTGTTTTTGTGACCGCGCTTAGGTCGGTTTGGGGAAAGATGTTC 1020
Query 1041 ACGGACGAACCGGAGATCCTTGGGCTTATTTCGGCCGCGCTTCCGATCTTGGGGCTTTGC 1100
||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 1021 ACGGACGAACCGGAGATTCTCGGGCTTATTTCGGCTGCGCTTCCGATCTTGGGGCTTTGC 1080
Query 1101 GAGATCGGAAACTCGCCGCAGACTGCCGCTTGCGGAGTCTTGACTGGGACGGCGAGGCCT 1160
||||| ||||||||||| ||||| || |||||||||||||||||||||||||| ||||||
Sbjct 1081 GAGATTGGAAACTCGCCACAGACGGCTGCTTGCGGAGTCTTGACTGGGACGGCTAGGCCT 1140
Query 1161 AAAGATGGAGCACGCGTCAACCTATGCGCATTCTACATTGTGGGCTTGCCTGTGGCAGTT 1220
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AAAGATGGAGCACGCGTTAACCTATGCGCATTCTACATTGTGGGCTTGCCTGTGGCAGTT 1200
Query 1221 ACGACCACGTTTGGGTTCAAGGTTGGGTTTCGTGGGCTATGGTTTGGACTGTTATCTGCG 1280
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 ACGACCACGTTTGGGTTTAAGGTTGGGTTTCGTGGGCTATGGTTTGGACTGTTATCTGCG 1260
Query 1281 CAGATGACGTGTTTGGTAATGCTGCTTTATACGTTAATCCGTACGGACTGGACCCATCAA 1340
||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||
Sbjct 1261 CAGATGACGTGTTTGGTAATGATGCTTTATACGTTAATCCGTACGGACTGGTCTCATCAA 1320
Query 1341 GTGAAGCGGGCAGAGGAACTTACCTCCGCTGCAGCCGAAAAAAGTCATTCGGAAGAAGAA 1400
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 1321 GTGAAGCGGGCAGAGGAACTTACCTCCGCTGCAGCCGACAAAAGCCATTCGGAAGACGAA 1380
Query 1401 ACCGTCCATGCTGAAGTAGGAGACAATGATGATATTAGTAGCAATGATCTGGAGATTGGT 1460
|||||||||||||||||| |||| |||||||| | ||||||||||||||||||||||||
Sbjct 1381 ACCGTCCATGCTGAAGTACAAGACGATGATGATGTGAGTAGCAATGATCTGGAGATTGGT 1440
Query 1461 TTACTACAAAACACGAATTGA 1481
||||||||||| |||||||||
Sbjct 1441 TTACTACAAAATACGAATTGA 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74045803875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5