BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg934610

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G38620.2 | Symbols: CDKB1;2 | cyclin-dependent kinase B1;2 |...   381    4e-105
  AT3G54180.1 | Symbols: CDC2B, CDKB1;1 | cyclin-dependent kinase...   235    4e-61 


> AT2G38620.2 | Symbols: CDKB1;2 | cyclin-dependent kinase B1;2 
| chr2:16152532-16154086 FORWARD LENGTH=1175
Length=1175

 Score =  381 bits (206),  Expect = 4e-105
 Identities = 223/231 (97%), Gaps = 2/231 (1%)
 Strand=Plus/Plus

Query  40   ATTGTTAGGAACACCAACTGAGCAGCAATGGCCGGGTGTAATGGCATTGCGTGACTGGCA  99
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  724  ATTGTTAGGAACACCAACTGAGCAGCAATGGCCGGGTGTAATGGCATTGCGTGACTGGCA  783

Query  100  TGTCTATCCAAAGTGGGAGCCGCAAGACTTTTCACGTGCTGTTCCATCTCTATCTCCTGA  159
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  784  TGTCTATCCAAAGTGGGAGCCGCAAGACTTATCACGTGCTGTTCCATCTCTATCTCCTGA  843

Query  160  AGGAAGAGATCTTCTCACGCAAATGCT-AAGGTACAATCCAACAGAAAGAATTTCGGCAA  218
            |||||  |||||||||||||||||| | ||| ||||||||| ||||||||||||| ||||
Sbjct  844  AGGAATTGATCTTCTCACGCAAATGTTGAAG-TACAATCCAGCAGAAAGAATTTCAGCAA  902

Query  219  AAGCAGCTCTCGATCATCCCTACTTTGACAGCCTTGACAAATCTCAGTTCT  269
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  903  AAGCAGCTCTCGATCATCCCTACTTTGACAGCCTTGACAAATCTCAGTTCT  953


> AT3G54180.1 | Symbols: CDC2B, CDKB1;1 | cyclin-dependent kinase 
B1;1 | chr3:20059796-20061438 FORWARD LENGTH=1204
Length=1204

 Score =  235 bits (127),  Expect = 4e-61
 Identities = 199/233 (85%), Gaps = 8/233 (3%)
 Strand=Plus/Plus

Query  41    TTGTTAGGAACACCAACTGAGCAGCAATGGCCGGGTGTAATGG-CATTGCGTGACTGGCA  99
             ||| ||||||||||||||||||||||||||||||||||  |   || |||||||||||||
Sbjct  786   TTGCTAGGAACACCAACTGAGCAGCAATGGCCGGGTGTT-TCCACACTGCGTGACTGGCA  844

Query  100   TGTCTATCCAAAGTGGGAGCCGCAAGACTTTTCACGTGCTGTTCCATCTCTATCTCCTGA  159
             ||| || || ||||||||||||||||||||  | | ||||||||| ||||| || ||| |
Sbjct  845   TGTTTACCCTAAGTGGGAGCCGCAAGACTTAACTCTTGCTGTTCCTTCTCTTTCACCTCA  904

Query  160   AGGAAGA-GATCTTCTCACGCAAATGCT-AAGGTACAATCCAACAGAAAGAATTTCGGCA  217
             |||| |  |||||||||||| ||||||| ||| ||||||||| | ||||||||||| |||
Sbjct  905   AGGA-GTTGATCTTCTCACGAAAATGCTCAAG-TACAATCCAGCCGAAAGAATTTCAGCA  962

Query  218   AAAGCAGCTCTCGATCATCCC-TACTTTGACAGCCTTGACAAATCTCAGTTCT  269
             ||| |||| || ||||| ||| || ||||||||||||||||| ||||||||||
Sbjct  963   AAAACAGCACTTGATCA-CCCATATTTTGACAGCCTTGACAAGTCTCAGTTCT  1014



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30391658935


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5