BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934611
Length=1444
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38630.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2468 0.0
AT3G54190.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1550 0.0
> AT2G38630.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr2:16154067-16156579 REVERSE LENGTH=1897
Length=1897
Score = 2468 bits (1336), Expect = 0.0
Identities = 1400/1432 (98%), Gaps = 0/1432 (0%)
Strand=Plus/Plus
Query 13 AAGCTTGAATGATGGAAGGAAGAAGAATCATAGCAAACCCTAGACCTTGTAGCGGTAGTA 72
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 270 AAGCTTGAATGATGGAAGGAAGAAGAATCATAGCAAACCCTAGACCGTGTAGCGGTAGTA 329
Query 73 AAAGAGTTGTTGCTAAGAAGAGGTCTCGTCCCGACGGATTCGTCAATAGCGTTAAAAAGC 132
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 330 GAAGAGTTATTGCTAAGAAGAGGTCTCGTCCCGATGGATTCGTCAATAGCGTTAAAAAGC 389
Query 133 TTCAACGCCGAGAAATCTCTTCTCGTATGGATCGAGCTTTCTCAATCAGCACCGCTCAAG 192
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 390 TTCAACGCCGAGAAATCTCTTCTCGTATGGATCGAGCTTTCTCAATCAGCACTGCTCAAG 449
Query 193 AGAGATTCCGCAATATGCGTCTCGTGGAGCAATATGACACGCATGATCCTAAAGGATACT 252
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 450 AGAGATTCCGCAATATGCGTCTCGTGGAGCAATATGATACGCATGATCCTAAAGGATACT 509
Query 253 GTTTAGTATCATTACCTAACTTGTTGAAACGAAGCAAAGTTATTGAGATTGTTGCTGCTC 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 GTTTAGTATCATTACCTAACTTGTTGAAACGAAGCAAAGTTATTGAGATTGTTGCTGCTC 569
Query 313 GAGACATTGTCTTTGCTCTTACTCTATCTGGTGTTTGTGCATCTTTTAGCAGAGAGACGA 372
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 570 GTGACATTGTCTTTGCTCTTACTCTATCTGGTGTCTGTGCATCTTTTAGCAGAGAGACGA 629
Query 373 ATAAAAGGGTTTGCTTTTTAAATGTTAGTCCTGATGAAGTCATTCGGAGTTTGTTCTACA 432
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 ATAAAAAGGTTTGCTTTTTAAATGTTAGTCCTGATGAAGTCATTCGGAGTTTGTTCTACA 689
Query 433 ACAAGAACAATGATTCTCTCATTACTGTTTCTGTTTACGCCTCTGACAATTACAGCTCTT 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 ACAAGAACAATGATTCTCTCATTACTGTTTCTGTTTACGCCTCTGACAATTACAGCTCTT 749
Query 493 TGAAATGCAGATCCACTAGAATCGAATATATTCTGAGGGGTCAAGCAGACGCAGGATTTC 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 TGAAATGCAGATCCACTAGAATCGAATATATTCTGAGGGGTCAAGCAGACGCAGGATTTC 809
Query 553 CTCTTTTTGAGTCTGAGTCACTAAAGTGGCCAGGTTTTGTAGAGTTTGATGATGTTAATG 612
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 810 CTCTTTTTGAGTCTGAGTCACTAAAGTGGCCAGGTTTTGTTGAGTTTGATGATGTTAATG 869
Query 613 GGAAGGTGCTGACATATTCTGCACAGGATAGTGTTTACAAGGTGTTTGATCTCAAAAACT 672
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 870 GGAAGGTGCTGACATATTCTGCACAGGATAGTGTTTACAAGGTGTTTGATCTGAAAAACT 929
Query 673 ATGCCTTGTTATACTCGATATCAGACAAAAATGTACAGGAAATTAAGATCAGTCCAGGGA 732
|||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 930 ATGCCTTGCTATATTCGATATCAGACAAAAATGTACAAGAAATTAAGATCAGTCCAGGGA 989
Query 733 TAATGTTGTTGATTTTCAAGAGAGCTGCGAGTCATGTTCCTTTGAAGATTCTATCAATCG 792
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 TAATGCTGTTGATTTTCAAGAGAGCTGCGAGTCATGTTCCTTTGAAGATTCTATCAATCG 1049
Query 793 AAGATGGCACGGTTCTCAAGTCCTTCAATCATTTGCTTCACCGAAACAAGAAAGTTGATT 852
|||||||||| |||| ||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1050 AAGATGGCACTCTTCTGAAGTCCTTCCATCATTTGCTTCACCGAAATAAGAAAGTTGATT 1109
Query 853 TCATTGAACAATTCAATGAAAAGCTTCTAGTTAAGCAAGAGAACGAGAATCTCCAAATAC 912
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1110 TCATTGAACAATTCAATGAAAAGCTTCTAGTTAAGCAAGAGAACGAGAATCTACAAATAC 1169
Query 913 TTGACGTTCGAAATGCTGAGCTGATAGAAGTTAGCAGAACTGAATTCATGACACCATCAG 972
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1170 TTGACGTTCGAAATGCTGAGCTGATAGAAGTTAGCAGAACTGACTTCATGACACCATCAG 1229
Query 973 CATTCATATTTTTGTATGAGAACCAGTTGTTTCTAACATTCAGGAACCGAAATGTTTCTG 1032
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1230 CATTCATATTTTTGTATGAGAATCAGTTGTTTCTAACATTCAGGAACCGAAATGTTTCTG 1289
Query 1033 TGTGGAATTTCCGCGGAGAGCTTGTGACCTCGTTTGAGGATCATCTTCTTTGGCATCCAG 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 TGTGGAATTTCCGCGGAGAGCTTGTGACCTCGTTTGAGGATCATCTTCTTTGGCATCCAG 1349
Query 1093 ACTGTAACACAAACAATATCTACATAACAAGCGATCAGGATCTGATCATCTCATATTGCA 1152
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1350 ACTGTAACACAAACAATATCTACATAACAAGCGATCAAGATCTGATCATCTCATATTGCA 1409
Query 1153 AGGCAGATACTGAAGATCAGTGGATAGAAGGAAATGCGGGGTCGATTAACATAAGCAATA 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 AGGCAGATACTGAAGATCAGTGGATAGAAGGAAATGCGGGGTCGATTAACATAAGCAATA 1469
Query 1213 TCTTGACTGGTAAATGCTTAGCTAAGATAAAAGCAAAAAATGGCCCTCCTAAGGAAGAAG 1272
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 1470 TCTTGACTGGTAAATGCTTAGCTAAGATAAAAGCAAATAATGGTCCTCCTAAGGAAGAGG 1529
Query 1273 ACTGCAGCAGTAGTGATTTGGGGAACTCCAATCGAAGGAGAAGTGCGGTTGCTGAGGCTT 1332
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1530 ACTGCAGCAGTAGTGATTTGGGGAATTCCTCTCGAAGGAGAAGTGCGGTTGCTGAGGCTT 1589
Query 1333 TGGAAGACATAACCGCTCTCTTCTACGACGAAGAACGGAATGAAATATACACAGGAAACA 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1590 TGGAAGACATAACCGCTCTCTTCTACGACGAAGAACGGAATGAAATATACACAGGAAACA 1649
Query 1393 GACACGGCTTTCTCCATGTCTGGTCTAATTGAAGCTACTCATCATTTGTTTT 1444
|||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1650 GACACGGCCTCCTCCATGTCTGGTCTAATTGAAGCTACTCATCATTTGTTTT 1701
> AT3G54190.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:20061528-20064154 REVERSE LENGTH=1909
Length=1909
Score = 1550 bits (839), Expect = 0.0
Identities = 1230/1418 (87%), Gaps = 29/1418 (2%)
Strand=Plus/Plus
Query 23 GATGGAAGGAAGAAGAATCATAGCAAACCCTAGACCTTGTAGCGGTAGTAAAAGAGTTGT 82
||||||||||||||| || | |||| ||||||||||||||| || | | |||| ||||
Sbjct 274 GATGGAAGGAAGAAGGATTACGGCAAGCCCTAGACCTTGTAGTGG-A--AGAAGAATTGT 330
Query 83 TGCTAAGAAGAGGTCTCGTCCCGACGGATTCGTCAATAGCGTTAAAAAGCTTCAACGCCG 142
|||||||| |||||||| ||||| ||||||||||| || ||||||||||||||||| |
Sbjct 331 GGCTAAGAAAAGGTCTCGACCCGATGGATTCGTCAACAGTGTTAAAAAGCTTCAACGAAG 390
Query 143 AGAAATCTCTTCTCGTATGGATCGAGCTTTCTCAATCAGCACCGCTCAAGAGAGATTCCG 202
||||||||||||||||| |||||||||||||| || |||||||| ||||||||||| ||
Sbjct 391 AGAAATCTCTTCTCGTAAAGATCGAGCTTTCTCTATTAGCACCGCCCAAGAGAGATTTCG 450
Query 203 CAATATGCGTCTCGTGGAGCAATATGACACGCATGATCCTAAAGGATACTGTTTAGTAT- 261
|| ||||||||||||||||||||||| || || ||||||||||| |||||||||| |
Sbjct 451 TAACATGCGTCTCGTGGAGCAATATGATACTCACGATCCTAAAGGGCACTGTTTAGT-TG 509
Query 262 CATTACC-TAACTTGTTGAA-ACGAAGC-AAAGTTATTGAGATTGTTGCTGCTCGAGACA 318
||||||| | ||| |||| | ||| | ||||||||||||||||||||||| | ||||
Sbjct 510 CATTACCGT-TTTTGATGAAGA-GAA-CTAAAGTTATTGAGATTGTTGCTGCAAGGGACA 566
Query 319 TTGTCTTTGCTCTTACTCTA-TCTGGTGTTTGTGCATCTTTTAGCAGAGAGACGAATAAA 377
|||| ||||| ||| | | | ||||||||||| ||| ||||||| |||||| |||| |||
Sbjct 567 TTGTTTTTGCGCTTGCAC-ATTCTGGTGTTTGCGCAGCTTTTAGTAGAGAGTCGAACAAA 625
Query 378 AGGGTTTGCTTTTTAAATGTTAGTCCTGATGAAGTCATTC-GGAGTTTGTTCTACAACAA 436
|| | |||||||||||||||||||| |||||||||| || |||| ||||||||||||||
Sbjct 626 AGAATATGCTTTTTAAATGTTAGTCCAGATGAAGTCA-TCAGGAGCTTGTTCTACAACAA 684
Query 437 GAACAATGATTCTCTCATTACTGTTTCTGTTTACGCCTCTGACAATTACAGCTCTTTGAA 496
|||||||||||||||||| || ||||||||||| || || ||||||| ||||||||||||
Sbjct 685 GAACAATGATTCTCTCATCACAGTTTCTGTTTATGCTTCAGACAATTTCAGCTCTTTGAA 744
Query 497 ATGCAGATCCACTAGAATCGAATATATTCTGAGGGGTCAAG-CAGACGCAGGATTTCCTC 555
|||||||||||||||||| || ||||||||||| |||| || | || ||||| ||| |||
Sbjct 745 ATGCAGATCCACTAGAATTGAGTATATTCTGAGAGGTC-AGCCGGATGCAGGGTTTGCTC 803
Query 556 TTTTTGAGTCTGAGTCACTAAAGTGGCCAGGTTTTGTAGAGTTTGATGATGTTAATGGGA 615
||||||||||||| ||| |||||||||| |||||||| |||||||||||||| ||||| |
Sbjct 804 TTTTTGAGTCTGAATCATTAAAGTGGCCTGGTTTTGTTGAGTTTGATGATGTCAATGGAA 863
Query 616 AGGTGCTGACATATTCTGCACAGGATAGTGTTTACAAGGTGTTTGATCTCAAAAACTATG 675
|||||||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||||
Sbjct 864 AGGTGCTGACTTATTCTGCGCAGGACAGTGTATACAAGGTGTTTGATCTGAAAAACTACA 923
Query 676 CCTTGTTATACTCGATATCAGACAAAAATGTACAGGAAATTAAGATCAGTCCAGGGATAA 735
|| || |||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 924 CCATGCTATATTCGATATCAGATAAAAATGTCCAGGAAATTAAAATCAGTCCAGGGATAA 983
Query 736 TGTTGTTGATTTTCAAGAGAGCTGCGAGTCATGTTCCTTTGAAGATTCTATCAATCGAAG 795
|||| ||||| |||||||||||||| |||||||||||| |||||||||| || || ||||
Sbjct 984 TGTTATTGATCTTCAAGAGAGCTGCCAGTCATGTTCCTCTGAAGATTCTGTCGATAGAAG 1043
Query 796 ATGGCACGGTTCTCAAGTCCTTCAATCATTTGCTTCACCGAAACAAGAAAGTTGATTTCA 855
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1044 ATGGCACTGTTCTCAAGTCCTTCAATCATTTGCTTCACCGAAACAAGAAAGTTGACTTCA 1103
Query 856 TTGAACAATTCAATGA-AAAGCTTCTAGTTAAGCAAGAGAACGAGAATCTCCAAATACTT 914
|||||||||||||||| ||| ||||| |||||||||||||| |||||||| ||||| |||
Sbjct 1104 TTGAACAATTCAATGAGAAA-CTTCTTGTTAAGCAAGAGAATGAGAATCTTCAAATTCTT 1162
Query 915 GACGTTC-GAAATGCTGAGCTGATAGAAGTTAGCAGAACTGAATTCATGACACCATCAGC 973
||||| | ||||||||||||| || |||||||| ||| |||| ||||||||||| || ||
Sbjct 1163 GACGT-CAGAAATGCTGAGCTAATGGAAGTTAGTAGAGCTGAGTTCATGACACCGTCTGC 1221
Query 974 ATTCATATTTTTGTATGAGAACCAGTTGTTTCTAACATTCAGGAACCGAAATGTTTCTGT 1033
|||||||||| |||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 1222 ATTCATATTTCTGTATGAGAACCAGTTGTTTCTGACATTCAGGAACCGGAACGTTTCTGT 1281
Query 1034 GTGGAA-TTTCCGCGGAGAGCTTGTGACCTCGTTTGAGGATCATCTTCTTTGGCATCCAG 1092
|||||| |||| |||||||||| || || || |||||||| |||||||| ||||||||||
Sbjct 1282 GTGGAACTTTC-GCGGAGAGCTCGTTACTTCCTTTGAGGACCATCTTCTATGGCATCCAG 1340
Query 1093 ACTGTAACACAAACAATATCTACATAACAAGCGATCAGGATCTGATCATCTCATATTGCA 1152
|||||||||| || ||||||||||| ||||| ||||| |||||||||||||| || ||||
Sbjct 1341 ACTGTAACACTAATAATATCTACATTACAAGTGATCAAGATCTGATCATCTCGTACTGCA 1400
Query 1153 AGGCAGATACTGAAGATCAGTGGATAGAAGGAAATGCGGGGTCGATTAACATAAGCAATA 1212
| |||||||| ||||||||||||||||||||||||||||| || || || || |||||||
Sbjct 1401 AAGCAGATACCGAAGATCAGTGGATAGAAGGAAATGCGGGATCAATCAATATCAGCAATA 1460
Query 1213 TCTTGACTGGTAAATGCTTAGCTAAGATAAAAGCAAAAAATGGCCCTCCTAAGGAAGAAG 1272
| |||||||| |||||||||||||| |||| | ||| | ||| ||||| || || || |
Sbjct 1461 TATTGACTGGGAAATGCTTAGCTAAAATAACACCAAGCAGTGGGCCTCCAAAAGATGATG 1520
Query 1273 ACTGCAGCAGTAGTGATT-T--GGG---GAACTCCAATCGAAGGAGAAGTGCGGTTGCTG 1326
| ||||||| ||| ||| | ||| |||||| || | ||| |||| || || ||||
Sbjct 1521 AGAGCAGCAGCAGTAATTGTATGGGAAAGAACTCAAAGCAAAGAAGAAACGCTGTAGCTG 1580
Query 1327 AGGCTTTGGAAGACATAACCGCTCTCTTCTACGACGAAGAACGGAATGAAATATACACAG 1386
| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 1581 AAGCTTTGGAAGACATAACCGCTCTTTTCTACGACGAAGAACGCAATGAGATATACACAG 1640
Query 1387 GAAACAGACACGGCTTTCTCCATGTCTGGTCTAATTGA 1424
|||||||||||||| || | ||||| ||||| ||||||
Sbjct 1641 GAAACAGACACGGCCTTGTTCATGTGTGGTCCAATTGA 1678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71184372810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5