BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg934616
Length=1307
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38670.1 | Symbols: PECT1 | phosphorylethanolamine cytidylyl... 2239 0.0
> AT2G38670.1 | Symbols: PECT1 | phosphorylethanolamine cytidylyltransferase
1 | chr2:16168837-16171918 FORWARD LENGTH=1646
Length=1646
Score = 2239 bits (1212), Expect = 0.0
Identities = 1272/1302 (98%), Gaps = 0/1302 (0%)
Strand=Plus/Plus
Query 1 TTCTTGTGTTTGTAAGCAAAAATGGTTTGGGAGAAAGAGAAGATCGTCGGAAGTTGTATA 60
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 TTCTCGTGTTCGTAAGCAAAAATGGTTTGGGAGAAAGAGAAGATCGTCGGAAGTTGTATA 181
Query 61 GTCGGAGGAGCTGCGTTCGCCGTCGGAGCTTCTTTCCTTCATCTTTTCCTTAAAGGTGAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 GTCGGAGGAGCTGCGTTCGCCGTCGGAGCTTCTTTCCTTCATCTTTTCCTTAAAGGTGAG 241
Query 121 CTTCCGTTAGGATTAGGTTTAGGTTTGTCTTCTCCATGGCGCATTTTGAGAAAACAAAAA 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 242 CTTCCGTTAGGATTAGGTTTAGGTTTGTCTTGTCCATGGCGCATTTTGAGAAAACGAAAA 301
Query 181 CCTGTTCGCGTTTACATGGATGGTTGCTTCGATATGATGCACTATGGCCACTGCAACGCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CCTGTTCGCGTTTACATGGATGGTTGCTTCGATATGATGCACTATGGCCACTGCAACGCT 361
Query 241 CTTCGTCAAGCTCGTGCTCTCGGTGACCAATTGGTGGTCGGTGTTGTTTCCGACGAAGAA 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 362 CTTCGTCAAGCTCGTGCTCTCGGTGACCAATTGGTCGTCGGTGTTGTTTCCGACGAAGAA 421
Query 301 ATCATAGCTAACAAAGGACCTCCTGTTACTCCTCTTCATGAAAGAATGACAATGGTGAAA 360
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 ATTATAGCCAACAAAGGACCTCCTGTTACTCCTCTTCATGAAAGAATGACAATGGTGAAA 481
Query 361 GCTGTGAAGTGGGTGGATGAAGTTATATCTGATGCTCCTTACGCTATTACGGAAGATTTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GCTGTGAAGTGGGTGGATGAAGTTATATCTGATGCTCCTTACGCTATTACGGAAGATTTC 541
Query 421 ATGAAGAAATTGTTCGATGAGTATCAGATCGATTACATTATCCATGGTGATGATCCTTGT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 ATGAAGAAATTGTTCGATGAGTATCAGATCGATTACATTATCCATGGTGATGATCCTTGT 601
Query 481 GTTCTTCCTGATGGAACTGATGCTTATGCACTTGCTAAGAAGGCTGGTCGTTACAAGCAG 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 GTTCTTCCTGATGGTACTGATGCTTATGCACTTGCTAAGAAGGCTGGTCGTTACAAGCAG 661
Query 541 ATTAAGCGTACAGAAGGAGTTTCTAGTACTGATATCGTTGGTCGTATGCTTCTTTGTGTA 600
|||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 662 ATTAAGCGCACTGAAGGAGTTTCTAGCACTGATATCGTTGGTCGTATGCTTCTTTGTGTA 721
Query 601 AGAGAAAGATCCATTAGTGACACTCATAGTCGTTCCTCTCTGCAAAGGCAATTTAGTCAT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 AGAGAAAGATCCATTAGTGACACTCATAGTCGTTCCTCTCTGCAAAGGCAATTTAGTCAT 781
Query 661 GGGCATAGTAGCCCAAAGTTTGAGGATGGAGCTTCTTCTGCTGGTACTCGTGTCTCGCAT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GGGCATAGTAGCCCAAAGTTTGAGGATGGAGCTTCTTCTGCTGGTACTCGTGTCTCGCAT 841
Query 721 TTTCTTCCTACTTCCCGCAGGATTGTTCAGTTCTCCAATGGAAAGGGGCCAGGACCTGAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 TTTCTTCCTACTTCCCGCAGGATTGTTCAGTTCTCCAATGGAAAGGGGCCAGGACCTGAT 901
Query 781 GCACGCATAATCTACATAGATGGTGCTTTTGATCTTTTCCATGCTGGCCATGTTGAGATT 840
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 GCACGCATTATCTACATAGATGGTGCTTTTGATCTTTTCCATGCTGGCCATGTTGAGATT 961
Query 841 CTTAGACGTGCTCGAGAGCTTGGAGACTTTCTTCTTGTTGGAATACATAATGACCAGACT 900
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 962 CTTAGACGTGCTCGAGAGCTTGGAGACTTTCTTCTTGTTGGTATACATAATGACCAGACT 1021
Query 901 GTCAGTGCTAAAAGAGGAGCTCATCGTCCAATCATGAATCTCCATGAAAGGAGCTTAAGC 960
|||||||||||| ||||||| ||||| || || |||||||||||||||||||||||||||
Sbjct 1022 GTCAGTGCTAAACGAGGAGCGCATCGCCCTATTATGAATCTCCATGAAAGGAGCTTAAGC 1081
Query 961 GTTCTGGCATGCCGTTACGTGGATGAGGTGATAATTGGTGCTCCATGGGAAGTGTCGAGA 1020
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 GTTCTGGCGTGCCGCTACGTGGATGAGGTGATAATTGGTGCTCCATGGGAAGTGTCGAGA 1141
Query 1021 GATACGATCACGACATTTGACATTTCGTTGGTGGTACATGGGACAGTAGCCGAGAGCGAT 1080
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1142 GATACGATCACGACATTTGACATCTCGTTGGTGGTACATGGGACAGTAGCCGAGAGCGAT 1201
Query 1081 GATTTTCAAAAGGAGGAAGATAATCCGTATTCTGTACCAATTAGCATGGGCATATTCCAA 1140
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 GATTTTCGAAAGGAGGAAGATAATCCGTATTCTGTACCAATTAGCATGGGCATATTCCAA 1261
Query 1141 ATTCTAGAAAGCCCTCTTGATATCACAACGTCCACCATAATCAGGAGGATTGTAGCAAAC 1200
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 GTTCTAGATAGCCCTCTTGATATCACAACGTCCACCATAATCAGGAGGATTGTAGCAAAC 1321
Query 1201 CATGAAGCTTATCAGAAACGTAATGCGAAAAAGGAAGCTAGTGAGAAAAAGTACTACGAG 1260
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 1322 CATGAAGCTTATCAGAAACGTAATGCGAAGAAGGAAGCTAGCGAGAAAAAGTATTACGAG 1381
Query 1261 CAGAAGTCGTTTGTGTCCGGGGACTGATACAGCTATTTGCTT 1302
|||||||||||||||||||| |||||||| |||||| |||||
Sbjct 1382 CAGAAGTCGTTTGTGTCCGGAGACTGATAGAGCTATATGCTT 1423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64306898145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5